SCR CMake package (#3916)
* SCR CMake package * Fix dtcmp variant description and set pdsh deptypes to build/run * added variants for system config file location * add variants for several scr cmake options * Added more variants for compile time options * Added libyogrt and made corrosponding changes to scr package. * Cleanup yogrt package now that Ive verified it works * Added description for libyogrt * upper case async api names * Make use of mv variants * fix pdsh package for scr * added IBM BBAPI as async option * update pdsh and scr to use static pdsh modules
This commit is contained in:
Elsa Gonsiorowski
becker33
parent
8a7678cae0
commit
bb4692fdb6
38
var/spack/repos/builtin/packages/libyogrt/package.py
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38
var/spack/repos/builtin/packages/libyogrt/package.py
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@ -0,0 +1,38 @@
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##############################################################################
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# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/llnl/spack
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# Please also see the LICENSE file for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class Libyogrt(AutotoolsPackage):
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"""Your One Get Remaining Time Library."""
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homepage = "https://github.com/LLNL/libyogrt"
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url = "https://github.com/LLNL/libyogrt/archive/1.20-6.tar.gz"
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version('1.20-6', '478f27512842cc5f2b74a0c22b851f60')
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version('1.20-5', 'd0fa6526fcd1f56ddb3d93f602ec72f7')
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version('1.20-4', '092bea10de22c505ce92aa07001decbb')
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version('1.20-3', 'd0507717009a5f8e2009e3b63594738f')
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version('1.20-2', '780bda03268324f6b5f72631fff6e6cb')
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@ -34,3 +34,15 @@ class Pdsh(AutotoolsPackage):
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url = "https://github.com/grondo/pdsh/archive/pdsh-2.31.tar.gz"
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version('2.31', 'cab34b0ca78f3cf596fd648b265223ed')
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variant('ssh', default=True, description="Build with ssh module")
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variant('static_modules', default=True, description="Build with static modules")
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def configure_args(self):
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args = []
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if '+ssh' in self.spec:
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args.append('--with-ssh')
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if '+static_modules' in self.spec:
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args.append('--enable-static-modules')
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return args
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@ -24,24 +24,123 @@
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##############################################################################
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from spack import *
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import os
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import shutil
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class Scr(Package):
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class Scr(CMakePackage):
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"""SCR caches checkpoint data in storage on the compute nodes of a
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Linux cluster to provide a fast, scalable checkpoint/restart
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capability for MPI codes"""
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homepage = "https://computation.llnl.gov/project/scr/"
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homepage = "http://computation.llnl.gov/projects/scalable-checkpoint-restart-for-mpi"
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depends_on("mpi")
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# depends_on("dtcmp")
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# NOTE: scr-v1.1.8 is built with autotools and is not properly build here.
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# scr-v1.1.8 will be deprecated with the upcoming release of v1.2.0
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# url = "https://github.com/LLNL/scr/releases/download/v1.1.8/scr-1.1.8.tar.gz"
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# version('1.1.8', '6a0f11ad18e27fcfc00a271ff587b06e')
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version('1.1-7', 'a5930e9ab27d1b7049447c2fd7734ebd',
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url='http://downloads.sourceforge.net/project/scalablecr/releases/scr-1.1-7.tar.gz')
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version('1.1.8', '6a0f11ad18e27fcfc00a271ff587b06e',
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url='https://github.com/hpc/scr/releases/download/v1.1.8/scr-1.1.8.tar.gz')
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version('master', git='https://github.com/llnl/scr.git', branch='master')
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def install(self, spec, prefix):
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configure("--prefix=" + prefix,
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"--with-scr-config-file=" + prefix + "/etc/scr.conf")
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make()
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make("install")
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depends_on('pdsh+static_modules', type=('build', 'run'))
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depends_on('zlib')
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depends_on('mpi')
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variant('dtcmp', default=True,
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description="Build with DTCMP. "
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"Necessary to enable user directory naming at runtime")
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depends_on('dtcmp', when="+dtcmp")
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variant('libyogrt', default=True,
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description="Build SCR with libyogrt for get_time_remaining.")
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depends_on('libyogrt', when="+libyogrt")
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# MySQL not yet in spack
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# variant('mysql', default=True, decription="MySQL database for logging")
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# depends_on('mysql', when="+mysql")
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variant('scr_config', default='scr.conf',
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description='Location for SCR to find its system config file. '
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'May be either absolute or relative to the install prefix')
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variant('copy_config', default=None,
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description='Location from which to copy SCR system config file. '
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'Must be an absolute path.')
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variant('fortran', default=True,
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description="Build SCR with fortran bindings")
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variant('resource_manager', default='SLURM',
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values=('SLURM', 'APRUN', 'PMIX', 'LSF', 'NONE'),
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multi=False,
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description="Resource manager for which to configure SCR.")
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variant('async_api', default='NONE',
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values=('NONE', 'CRAY_DW', 'IBM_BBAPI', 'INTEL_CPPR'),
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multi=False,
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description="Asynchronous data transfer API to use with SCR.")
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variant('file_lock', default='FLOCK',
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values=('FLOCK', 'FNCTL', 'NONE'),
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multi=False,
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description='File locking style for SCR.')
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variant('cache_base', default='/tmp',
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description='Compile time default location for checkpoint cache.')
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variant('cntl_base', default='/tmp',
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description='Compile time default location for control directory.')
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def get_abs_path_rel_prefix(self, path):
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# Return path if absolute, otherwise prepend prefix
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if os.path.isabs(path):
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return path
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else:
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return join_path(self.spec.prefix, path)
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def cmake_args(self):
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spec = self.spec
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args = []
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args.append('-DENABLE_FORTRAN={0}'.format('+fortran' in spec))
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conf_path = self.get_abs_path_rel_prefix(
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self.spec.variants['scr_config'].value)
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args.append('-DCMAKE_SCR_CONFIG_FILE={0}'.format(conf_path))
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# We uppercase the values for these to avoid unnecessary user error.
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args.append('-DSCR_RESOURCE_MANAGER={0}'.format(
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spec.variants['resource_manager'].value.upper()))
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args.append('-DSCR_ASYNC_API={0}'.format(
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spec.variants['async_api'].value.upper()))
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args.append('-DSCR_FILE_LOCK={0}'.format(
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spec.variants['file_lock'].value.upper()))
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args.append('-DSCR_CACHE_BASE={0}'.format(
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spec.variants['cache_base'].value))
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args.append('-DSCR_CNTL_BASE={0}'.format(
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spec.variants['cntl_base'].value))
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args.append('-DWITH_PDSH_PREFIX={0}'.format(spec['pdsh'].prefix))
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if "+dtcmp" in spec:
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args.append('-DWITH_DTCMP_PREFIX={0}'.format(spec['dtcmp'].prefix))
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if "+libyogrt" in spec:
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args.append('-DWITH_YOGRT_PREFIX={0}'.format(
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spec['libyogrt'].prefix))
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# if "+mysql" in spec:
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# args.append('-DWITH_MYSQL_PREFIX={0}'.format(
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# spec['mysql'].prefix))
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return args
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@run_after('install')
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def copy_config(self):
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spec = self.spec
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if spec.variants['copy_config'].value:
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dest_path = self.get_abs_path_rel_prefix(
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spec.variants['scr_config'].value)
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shutil.copyfile(spec.variants['copy_config'].value, dest_path)
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