zhangyiss/spack
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

r-goseq: new package (#8939)

Browse Source 
* r-goseq: new package

* r-goseq: git not url

* r-goseq: adding packages needed at runtime

* r-goseq: package type

* r-goseq: dep types

* r-goseq: one more
This commit is contained in:
Levi Baber 2018-08-26 19:45:23 -05:00 committed by Adam J. Stewart
parent 7c06492d94
commit bba5967dcc
1 changed files with 43 additions and 0 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

43
var/spack/repos/builtin/packages/r-goseq/package.py Normal file
View File

@ -0,0 +1,43 @@
##############################################################################
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/spack/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RGoseq(RPackage):
"""Detects Gene Ontology and/or other user defined categories which are
over/under represented in RNA-seq data"""
homepage = "https://bioconductor.org/packages/release/bioc/html/goseq.html"
git = "https://git.bioconductor.org/packages/goseq.git"
version('1.32.0', commit='32fcbe647eea17d7d0d7a262610811502c421d36')
depends_on('r@3.5.0:3.5.9', when='@1.32.0:', type=('build', 'run'))
depends_on('r-biasedurn', type=('build', 'run'))
depends_on('r-genelendatabase@1.9.2:', type=('build', 'run'))
depends_on('r-mgcv', type=('build', 'run'))
depends_on('r-annotationdbi', type=('build', 'run'))
depends_on('r-go-db', type=('build', 'run'))
depends_on('r-biocgenerics', type=('build', 'run'))