From bc73e85af8fe4d3e4fef13fa3a1d7031a5cd9cd4 Mon Sep 17 00:00:00 2001 From: Sinan Date: Wed, 23 May 2018 05:25:42 -0700 Subject: [PATCH] Package/mirdeep/fix for new url take2 (#8247) * rename: mirdeep -> mirdeep2 * fixes for new url --- .../builtin/packages/{mirdeep => mirdeep2}/package.py | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) rename var/spack/repos/builtin/packages/{mirdeep => mirdeep2}/package.py (86%) diff --git a/var/spack/repos/builtin/packages/mirdeep/package.py b/var/spack/repos/builtin/packages/mirdeep2/package.py similarity index 86% rename from var/spack/repos/builtin/packages/mirdeep/package.py rename to var/spack/repos/builtin/packages/mirdeep2/package.py index 60f5aaaac90..02218c4da43 100644 --- a/var/spack/repos/builtin/packages/mirdeep/package.py +++ b/var/spack/repos/builtin/packages/mirdeep2/package.py @@ -26,14 +26,14 @@ import glob -class Mirdeep(Package): +class Mirdeep2(Package): """miRDeep2 is a completely overhauled tool which discovers microRNA genes by analyzing sequenced RNAs.""" homepage = "https://www.mdc-berlin.de/8551903/en/" - url = "https://www.mdc-berlin.de/45995549/en/research/research_teams/systems_biology_of_gene_regulatory_elements/projects/miRDeep/mirdeep2_0_0_8.zip" + url = "https://www.mdc-berlin.de/system/files/migrated_files/fiona/mirdeep2_0_0_8.zip" - version('2.0.0.8', 'a707f7d7ad4a2975fb8b2e78c5bcf483') + version('0.0.8', 'a707f7d7ad4a2975fb8b2e78c5bcf483') depends_on('perl', type=('build', 'run')) depends_on('perl-pdf-api2', type=('build', 'run')) @@ -43,7 +43,7 @@ class Mirdeep(Package): depends_on('randfold') def url_for_version(self, version): - url = 'https://www.mdc-berlin.de/45995549/en/research/research_teams/systems_biology_of_gene_regulatory_elements/projects/miRDeep/mirdeep{0}.zip' + url = 'https://www.mdc-berlin.de/system/files/migrated_files/fiona/mirdeep2_{0}.zip' return url.format(version.underscored) def patch(self):