idba: new package (#4722)

var/spack/repos/builtin/packages/idba/package.py

@@ -0,0 +1,48 @@
+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Idba(AutotoolsPackage):
+    """IDBA is a practical iterative De Bruijn Graph De Novo Assembler for
+       sequence assembly in bioinfomatics."""
+
+    homepage = "http://i.cs.hku.hk/~alse/hkubrg/projects/idba/"
+    url      = "https://github.com/loneknightpy/idba/archive/1.1.3.tar.gz"
+
+    version('1.1.3', '303d9b4af7a7498b56ac9698028b4e15')
+
+    depends_on('m4', type='build')
+    depends_on('autoconf', type='build')
+    depends_on('automake', type='build')
+    depends_on('libtool', type='build')    
+
+    conflicts('%cce')
+    conflicts('%clang')
+    conflicts('%intel')
+    conflicts('%nag')
+    conflicts('%pgi')
+    conflicts('%xl')
+    conflicts('%xl_r')