ZFP: CMake Package (#12999)
* ZFP: CMake Package ZFP is primarily build via CMake, which will have all install logic and configuration files generated. The 0.5.0 release did not support this yet, so we toss it. * Patch ADIOS1: ZFP 0.5.1+ support * ZFP: Expose all CMake variants
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@ -79,7 +79,7 @@ class Adios(AutotoolsPackage):
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depends_on('sz@:1.4.10', when='@:1.12.0 +sz')
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depends_on('sz@1.4.11.0:1.4.11.99', when='@1.13.0 +sz')
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depends_on('sz@1.4.12.3:1.4.12.99', when='@1.13.1: +sz')
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depends_on('zfp@:0.5.0', when='+zfp')
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depends_on('zfp@0.5.1:0.5.99', when='+zfp')
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depends_on('lz4', when='+lz4')
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depends_on('c-blosc@1.12.0:', when='+blosc')
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# optional transports & file converters
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@ -101,6 +101,10 @@ class Adios(AutotoolsPackage):
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# https://github.com/spack/spack/issues/1683
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patch('adios_1100.patch', when='@:1.10.0^hdf5@1.10:')
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# ADIOS 1.13.1 is written for ZFP 0.5.0 interfaces
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# https://github.com/ornladios/ADIOS/pull/204
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patch('zfp051.patch', when='@1.11.0:1.13.1')
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def validate(self, spec):
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"""Checks if incompatible variants have been activated at the same time
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22
var/spack/repos/builtin/packages/adios/zfp051.patch
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22
var/spack/repos/builtin/packages/adios/zfp051.patch
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@ -0,0 +1,22 @@
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diff --git a/src/transforms/adios_transform_zfp_common.h b/src/transforms/adios_transform_zfp_common.h
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index e453d078..681198ee 100644
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--- a/src/transforms/adios_transform_zfp_common.h
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+++ b/src/transforms/adios_transform_zfp_common.h
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@@ -146,7 +146,7 @@ static void zfp_initialize(void* array, struct zfp_buffer* zbuff)
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zbuff->error = true;
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return;
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}
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- zfp_stream_set_accuracy(zbuff->zstream, tol, zbuff->type);
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+ zfp_stream_set_accuracy(zbuff->zstream, tol);
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}
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else if (zbuff->mode == 1) // precision
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{
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@@ -172,7 +172,7 @@ static void zfp_initialize(void* array, struct zfp_buffer* zbuff)
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tol = (uint) ct;
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- zfp_stream_set_precision(zbuff->zstream, tol, zbuff->type);
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+ zfp_stream_set_precision(zbuff->zstream, tol);
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}
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else if (zbuff->mode == 2) // rate
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{
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@ -94,7 +94,7 @@ class Adios2(CMakePackage):
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depends_on('bzip2', when='+bzip2')
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depends_on('libpng@1.6:', when='@2.4.0: +png')
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# depends_on('mgard', when='@2.3.0: +mgard')
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depends_on('zfp', when='+zfp')
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depends_on('zfp@0.5.1:', when='+zfp')
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# depends_on('sz@:1.4.12', when='+sz')
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extends('python', when='+python')
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@ -6,7 +6,7 @@
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from spack import *
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class Zfp(MakefilePackage):
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class Zfp(CMakePackage):
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"""zfp is an open source C/C++ library for high-fidelity, high-throughput
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lossy compression of floating-point and integer multi-dimensional
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arrays.
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@ -15,10 +15,10 @@ class Zfp(MakefilePackage):
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homepage = 'http://computing.llnl.gov/projects/floating-point-compression'
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url = 'http://computing.llnl.gov/projects/floating-point-compression/download/zfp-0.5.2.tar.gz'
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version('0.5.5', sha256='fdf7b948bab1f4e5dccfe2c2048fd98c24e417ad8fb8a51ed3463d04147393c5')
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version('0.5.4', sha256='768a05ed9bf10e54ac306f90b81dd17b0e7b13782f01823d7da4394fd2da8adb')
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version('0.5.2', '2f0a77aa34087219a6e10b8b7d031e77')
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version('0.5.1', '0ed7059a9b480635e0dd33745e213d17')
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version('0.5.0', '2ab29a852e65ad85aae38925c5003654')
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version('0.5.2', sha256='89e718edb966422b5898b5c37b1b0a781d4effacb511520558469e3ff7f65d7c')
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version('0.5.1', sha256='867c04cf965f1c70d9725b396c6e1b5d29db55b0d69b8e87a995aaebd221b830')
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variant('bsws',
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default='64',
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@ -26,41 +26,42 @@ class Zfp(MakefilePackage):
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multi=False,
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description='Bit stream word size: use smaller for finer '
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'rate granularity. Use 8 for H5Z-ZFP filter.')
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variant('strided', default=False,
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description='Enable strided access for progressive zfp streams')
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variant('aligned', default=False,
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description='Enable aligned memory allocation')
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variant('twoway', default=False,
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description='Use two-way skew-associative cache')
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variant('fasthash', default=False,
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description='Use a faster but more collision prone hash function')
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variant('profile', default=False,
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description='Count cache misses')
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variant('shared', default=True,
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description='Build shared versions of the library')
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def edit(self, spec, prefix):
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config_file = FileFilter('Config')
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config_file.filter(
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r'^\s*#\s*DEFS\s*\+=\s*-DBIT_STREAM_WORD_TYPE\s*=\s*uint8',
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'DEFS += -DBIT_STREAM_WORD_TYPE=uint%s' %
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spec.variants['bsws'].value)
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depends_on('cmake@3.4.0:', type='build')
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def build(self, spec, prefix):
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with working_dir('src'):
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if '~shared' in spec:
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make('static')
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else:
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make('shared')
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def cmake_args(self):
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spec = self.spec
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def install(self, spec, prefix):
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incdir = 'include' if spec.satisfies('@0.5.1:') else 'inc'
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args = [
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'-DZFP_BIT_STREAM_WORD_SIZE:STRING={0}'.format(
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spec.variants['bsws'].value),
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'-DZFP_WITH_BIT_STREAM_STRIDED:BOOL={0}'.format(
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'ON' if '+strided' in spec else 'OFF'),
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'-DZFP_WITH_ALIGNED_ALLOC:BOOL={0}'.format(
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'ON' if '+aligned' in spec else 'OFF'),
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'-DZFP_WITH_CACHE_TWOWAY:BOOL={0}'.format(
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'ON' if '+twoway' in spec else 'OFF'),
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'-DBUILD_SHARED_LIBS:BOOL={0}'.format(
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'ON' if '+shared' in spec else 'OFF'),
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'-DBUILD_TESTING:BOOL={0}'.format(
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'ON' if self.run_tests else 'OFF')
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]
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if spec.version >= Version('0.5.2'):
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args.append('-DZFP_WITH_CACHE_FAST_HASH:BOOL={0}'.format(
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'ON' if '+fasthash' in spec else 'OFF'))
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args.append('-DZFP_WITH_CACHE_PROFILE:BOOL={0}'.format(
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'ON' if '+profile' in spec else 'OFF'))
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# Note: ZFP package does not provide an install target
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mkdirp(prefix.lib)
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mkdirp(prefix.include)
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# Note: ZFP package builds .so files even on OSX
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if '~shared' in spec:
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install('lib/libzfp.a', prefix.lib)
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else:
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install('lib/libzfp.so', prefix.lib)
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install('%s/zfp.h' % incdir, prefix.include)
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install('%s/bitstream.h' % incdir, prefix.include)
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if spec.satisfies('@0.5.1:'):
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mkdirp('%s/zfp' % prefix.include)
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install('%s/zfp/system.h' % incdir, '%s/zfp' % prefix.include)
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install('%s/zfp/types.h' % incdir, '%s/zfp' % prefix.include)
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else:
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install('%s/types.h' % incdir, prefix.include)
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install('%s/system.h' % incdir, prefix.include)
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return args
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