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Add standard header, use spack helpers

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Added the standard header (stolen from R).

Touched up the install to use set_executable rather than doing it
myself.
This commit is contained in:
George Hartzell 2016-07-25 14:17:44 -04:00
parent 4373a2b629
commit bfcec69630
1 changed files with 26 additions and 5 deletions
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31
var/spack/repos/builtin/packages/nextflow/package.py
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@ -1,6 +1,29 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
from glob import glob
import os
class Nextflow(Package):
"""Data-driven computational pipelines"""
@ -17,8 +40,6 @@ def unpack(self):
pass
def install(self, spec, prefix):
chmod = which('chmod')
mkdirp(prefix.bin)
install("nextflow", join_path(prefix.bin, "nextflow"))
chmod('+x', join_path(prefix.bin, "nextflow"))
set_executable( join_path(prefix.bin, "nextflow"))