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*: no loop over files with filter_file(*files) (#46420)

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* *: no loop over files with filter_file(*files)
* scalpel: revert
This commit is contained in:
Wouter Deconinck 2024-09-22 12:04:23 -05:00 committed by GitHub
parent f73f0f861d
commit c118c7733b
No known key found for this signature in database
GPG Key ID: B5690EEEBB952194
5 changed files with 9 additions and 18 deletions
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6
var/spack/repos/builtin/packages/augustus/package.py
View File

@ -168,13 +168,11 @@ def filter_sbang(self):
pattern = "^#!.*"
repl = f"#!{self.spec['perl'].command.path}"
files = glob.glob("*.pl")
for file in files:
filter_file(pattern, repl, *files, backup=False)
filter_file(pattern, repl, *files, backup=False)
repl = f"#!{self.spec['python'].command.path}"
files = glob.glob("*.py")
for file in files:
filter_file(pattern, repl, *files, backup=False)
filter_file(pattern, repl, *files, backup=False)
def setup_build_environment(self, env):
htslib = self.spec["htslib"].prefix

3
var/spack/repos/builtin/packages/braker/package.py
View File

@ -63,8 +63,7 @@ def filter_sbang(self):
pattern = "^#!.*/usr/bin/env perl"
repl = "#!{0}".format(self.spec["perl"].command.path)
files = glob.iglob("*.pl")
for file in files:
filter_file(pattern, repl, *files, backup=False)
filter_file(pattern, repl, *files, backup=False)
def setup_run_environment(self, env):
env.prepend_path("PERL5LIB", self.prefix.lib)

3
var/spack/repos/builtin/packages/fplo/package.py
View File

@ -136,5 +136,4 @@ def perl_interpreter(self):
pattern = "^#!.*/usr/bin/perl"
repl = "#!{0}".format(self.spec["perl"].command.path)
files = ["fconv2", "fconvdens2", "fdowngrad.pl", "fout2in", "grBhfat", "grpop"]
for file in files:
filter_file(pattern, repl, *files, backup=False)
filter_file(pattern, repl, *files, backup=False)

3
var/spack/repos/builtin/packages/genemark-et/package.py
View File

@ -62,8 +62,7 @@ def filter_sbang(self):
pattern = "^#!.*/usr/bin/perl"
repl = "#!{0}".format(self.spec["perl"].command.path)
files = glob.iglob("*.pl")
for file in files:
filter_file(pattern, repl, *files, backup=False)
filter_file(pattern, repl, *files, backup=False)
def setup_run_environment(self, env):
env.prepend_path("PERL5LIB", self.prefix.lib)

12
var/spack/repos/builtin/packages/hisat2/package.py
View File

@ -89,24 +89,20 @@ def filter_sbang(self):
pattern = "^#!.*/usr/bin/env python"
repl = f"#!{self.spec['python'].command.path}"
files = ["hisat2-build", "hisat2-inspect"]
for file in files:
filter_file(pattern, repl, *files, backup=False)
filter_file(pattern, repl, *files, backup=False)
pattern = "^#!.*/usr/bin/env perl"
repl = f"#!{self.spec['perl'].command.path}"
files = ["hisat2"]
for file in files:
filter_file(pattern, repl, *files, backup=False)
filter_file(pattern, repl, *files, backup=False)
pattern = "^#!.*/usr/bin/env python3"
repl = f"#!{self.spec['python'].command.path}"
files = glob.glob("*.py")
for file in files:
filter_file(pattern, repl, *files, backup=False)
filter_file(pattern, repl, *files, backup=False)
with working_dir(self.prefix.scripts):
pattern = "^#!.*/usr/bin/perl"
repl = f"#!{self.spec['perl'].command.path}"
files = glob.glob("*.pl")
for file in files:
filter_file(pattern, repl, *files, backup=False)
filter_file(pattern, repl, *files, backup=False)