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star: updating to 2.7.11a (#42011)

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Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
This commit is contained in:
George Young 2024-02-05 11:06:01 +00:00 committed by GitHub
parent fa4568d9c9
commit c15ed38cef
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GPG Key ID: B5690EEEBB952194
1 changed files with 8 additions and 1 deletions
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var/spack/repos/builtin/packages/star/package.py
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@ -14,6 +14,7 @@ class Star(MakefilePackage):
license("MIT") license("MIT")
version("2.7.11a", sha256="542457b1a4fee73f27a581b1776e9f73ad2b4d7e790388b6dc71147bd039f99a")
version("2.7.10b", sha256="0d1b71de6c5be1c5d90b32130d2abcd5785a4fc7c1e9bf19cc391947f2dc46e5") version("2.7.10b", sha256="0d1b71de6c5be1c5d90b32130d2abcd5785a4fc7c1e9bf19cc391947f2dc46e5")
version("2.7.10a", sha256="af0df8fdc0e7a539b3ec6665dce9ac55c33598dfbc74d24df9dae7a309b0426a") version("2.7.10a", sha256="af0df8fdc0e7a539b3ec6665dce9ac55c33598dfbc74d24df9dae7a309b0426a")
version("2.7.6a", sha256="9320797c604673debea0fe8f2e3762db364915cc59755de1a0d87c8018f97d51") version("2.7.6a", sha256="9320797c604673debea0fe8f2e3762db364915cc59755de1a0d87c8018f97d51")
@ -36,6 +37,8 @@ class Star(MakefilePackage):
) )
depends_on("zlib-api") depends_on("zlib-api")
# required for certain steps in the makefile
depends_on("xxd", type="build")
build_directory = "source" build_directory = "source"
@ -44,8 +47,12 @@ def edit(self, spec, prefix):
env["CXXFLAGS_SIMD"] = "" env["CXXFLAGS_SIMD"] = ""
def build(self, spec, prefix): def build(self, spec, prefix):
# different make targets if we're compiling for Mac M1/2
with working_dir(self.build_directory): with working_dir(self.build_directory):
make("STAR", "STARlong") if spec.satisfies("platform=darwin target=aarch64:"):
make("STARforMacStatic", "STARlongForMacStatic")
else:
make("STAR", "STARlong")
def install(self, spec, prefix): def install(self, spec, prefix):
mkdirp(prefix.bin) mkdirp(prefix.bin)