WarpX: Python on pyAMReX (#45251)
* WarpX: Python on pyAMReX Long overdue update for WarpX: in 2024, we updated our Python bindings to rely on the new pyAMReX package. This deprecates the old `py-warpx` package and adds a new dependency and variant to WarpX. Also deprecates old versions that we will not continue to support. * Update Cloud/E4S Pipelines for WarpX `py-warpx` is replaced by `warpx +python` oneAPI does not support IPO/LTO: diable for `py-amrex` even though pybind11 strongly encourages it.
This commit is contained in:
Axel Huebl
@@ -258,7 +258,6 @@ ci:
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- py-scipy
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- py-statsmodels
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- py-warlock
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- py-warpx
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- raja
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- slepc
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- slurm
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@@ -272,6 +271,7 @@ ci:
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- vtk
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- vtk-h
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- vtk-m
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- warpx +python
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- zfp
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build-job:
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tags: [ "spack", "medium" ]
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@@ -169,13 +169,13 @@ spack:
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# - phist # fortran_bindings/CMakeFiles/phist_fort.dir/phist_testing.F90.o: ftn-78 ftn: ERROR in command line. The -f option has an invalid argument, "no-math-errno".
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# - plasma # %cce conflict
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# - py-jupyterhub # rust: ld.lld: error: relocation R_X86_64_32 cannot be used against local symbol; recompile with -fPIC'; defined in /opt/cray/pe/cce/15.0.1/cce/x86_64/lib/no_mmap.o, referenced by /opt/cray/pe/cce/15.0.1/cce/x86_64/lib/no_mmap.o:(__no_mmap_for_malloc)
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# - py-warpx # py-scipy: meson.build:82:0: ERROR: Unknown compiler(s): [['/home/gitlab-runner-3/builds/dWfnZWPh/0/spack/spack/lib/spack/env/cce/ftn']]
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# - quantum-espresso # quantum-espresso: CMake Error at cmake/FindSCALAPACK.cmake:503 (message): A required library with SCALAPACK API not found. Please specify library
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# - scr # scr: make[2]: *** [examples/CMakeFiles/test_ckpt_F.dir/build.make:112: examples/test_ckpt_F] Error 1: /opt/cray/pe/cce/15.0.1/binutils/x86_64/x86_64-pc-linux-gnu/bin/ld: /opt/cray/pe/mpich/8.1.25/ofi/cray/10.0/lib/libmpi_cray.so: undefined reference to `PMI_Barrier'
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# - strumpack ~slate # strumpack: [test/CMakeFiles/test_HSS_seq.dir/build.make:117: test/test_HSS_seq] Error 1: ld.lld: error: undefined reference due to --no-allow-shlib-undefined: mpi_abort_
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# - upcxx # upcxx: configure error: User requested --enable-ofi but I don't know how to build ofi programs for your system
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# - variorum # variorum: /opt/cray/pe/cce/15.0.1/binutils/x86_64/x86_64-pc-linux-gnu/bin/ld: /opt/cray/pe/lib64/libpals.so.0: undefined reference to `json_array_append_new@@libjansson.so.4'
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# - xyce +mpi +shared +pymi +pymi_static_tpls ^trilinos~shylu # openblas: ftn-2307 ftn: ERROR in command line: The "-m" option must be followed by 0, 1, 2, 3 or 4.; make[2]: *** [<builtin>: spotrf2.o] Error 1; make[1]: *** [Makefile:27: lapacklib] Error 2; make: *** [Makefile:250: netlib] Error 2
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# - warpx +python # py-scipy: meson.build:82:0: ERROR: Unknown compiler(s): [['/home/gitlab-runner-3/builds/dWfnZWPh/0/spack/spack/lib/spack/env/cce/ftn']]
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cdash:
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build-group: E4S Cray
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@@ -163,13 +163,13 @@ spack:
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# - phist
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# - plasma
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# - py-jupyterhub
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# - py-warpx
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# - quantum-espresso
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# - scr
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# - strumpack ~slate
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# - upcxx
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# - variorum
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# - xyce +mpi +shared +pymi +pymi_static_tpls ^trilinos~shylu
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# - warpx +python
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cdash:
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build-group: E4S Cray SLES
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@@ -133,7 +133,6 @@ spack:
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- py-jupyterhub
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- py-libensemble
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- py-petsc4py
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- py-warpx
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- qthreads scheduler=distrib
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- quantum-espresso
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- raja
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@@ -157,6 +156,7 @@ spack:
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- upcxx
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# - veloc
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- wannier90
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- warpx +python
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- xyce +mpi +shared +pymi +pymi_static_tpls
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# INCLUDED IN ECP DAV CPU
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# - adios2
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@@ -134,7 +134,6 @@ spack:
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- py-jupyterhub
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- py-libensemble
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- py-petsc4py
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- py-warpx
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- qthreads scheduler=distrib
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- quantum-espresso
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- raja
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@@ -157,6 +156,7 @@ spack:
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- umpire
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- upcxx
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- wannier90
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- warpx +python
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- wps
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- wrf
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- xyce +mpi +shared +pymi +pymi_static_tpls
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@@ -143,12 +143,11 @@ spack:
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- precice
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- pruners-ninja
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- pumi
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- py-amrex
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- py-amrex ~ipo # oneAPI 2024.2.0 builds do not support IPO/LTO says CMake, even though pybind11 strongly encourages it
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- py-h5py
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- py-jupyterhub
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- py-libensemble
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- py-petsc4py
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- py-warpx
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- qthreads scheduler=distrib
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- raja
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- rempi
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@@ -189,6 +188,7 @@ spack:
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- veloc
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# - visit # visit: +visit: visit_vtk/lightweight/vtkSkewLookupTable.C:32:10: error: cannot initialize return object of type 'unsigned char *' with an rvalue of type 'const unsigned char *'
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- vtk-m ~openmp
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- warpx +python ~python_ipo ^py-amrex ~ipo # oneAPI 2024.2.0 builds do not support IPO/LTO says CMake, even though pybind11 strongly encourages it
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- zfp
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# --
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# - chapel ~cuda ~rocm # llvm: closures.c:(.text+0x305e): undefined reference to `_intel_fast_memset'
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@@ -234,10 +234,10 @@ spack:
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- sundials +sycl cxxstd=17 +examples-install
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- tau +mpi +opencl +level_zero ~pdt +syscall # requires libdrm.so to be installed
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- upcxx +level_zero
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- warpx ~qed +python ~python_ipo compute=sycl ^py-amrex ~ipo # qed for https://github.com/ECP-WarpX/picsar/pull/53 prior to 24.09 release; ~ipo for oneAPI 2024.2.0 GPU builds do not support IPO/LTO says CMake, even though pybind11 strongly encourages it
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# --
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# - hpctoolkit +level_zero # dyninst@12.3.0%gcc: /usr/bin/ld: libiberty/./d-demangle.c:142: undefined reference to `_intel_fast_memcpy'; can't mix intel-tbb@%oneapi with dyninst%gcc
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# - slate +sycl # slate: ifx: error #10426: option '-fopenmp-targets' requires '-fiopenmp'
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# - warpx compute=sycl # warpx: fetchedamrex-src/Src/Base/AMReX_RandomEngine.H:18:10: fatal error: 'oneapi/mkl/rng/device.hpp' file not found
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ci:
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@@ -137,7 +137,6 @@ spack:
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- py-jupyterhub
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- py-libensemble
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- py-petsc4py
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- py-warpx
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- qthreads scheduler=distrib
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- quantum-espresso
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- raja
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@@ -160,6 +159,7 @@ spack:
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- umpire
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- upcxx
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- wannier90
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- warpx +python
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- wps
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- wrf
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- xyce +mpi +shared +pymi +pymi_static_tpls
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@@ -147,7 +147,6 @@ spack:
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- py-jupyterhub
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- py-libensemble
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- py-petsc4py
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- py-warpx
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- qthreads scheduler=distrib
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- quantum-espresso
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- raja
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@@ -190,6 +189,7 @@ spack:
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- veloc
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- visit # silo: https://github.com/spack/spack/issues/39538
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- vtk-m
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- warpx +python
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- zfp
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# --
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# - geopm # geopm: https://github.com/spack/spack/issues/38795
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