zhangyiss/spack
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

trinity: Version Update to 2.12.0 (#23430)

Browse Source 
Added version requirements for deps
Changed url to get proper versions
This commit is contained in:
Desmond Orton 2021-05-18 12:12:33 -06:00 committed by GitHub
parent 13cb8ef2c2
commit c22a5326d8
No known key found for this signature in database
GPG Key ID: 4AEE18F83AFDEB23
1 changed files with 11 additions and 0 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

11
var/spack/repos/builtin/packages/trinity/package.py
View File

@ -22,8 +22,11 @@ class Trinity(MakefilePackage):
homepage = "http://trinityrnaseq.github.io/"
url = "https://github.com/trinityrnaseq/trinityrnaseq/archive/Trinity-v2.6.6.tar.gz"
version('2.12.0.FULL', sha256='0d47dc433cc3003e1c732b97da605e29c6ccafa38cd52cdb8ecc42399a9195d0',
url="https://github.com/trinityrnaseq/trinityrnaseq/releases/download/v2.12.0/trinityrnaseq-v2.12.0.FULL.tar.gz")
version('2.6.6', sha256='868dfadeefaf2d3c6150a88d5e86fbc09466d69bbf4a65f70b4f5a7485668984')
depends_on("cmake", type="build")
depends_on("java@8:", type=("build", "run"))
depends_on("bowtie2")
depends_on("jellyfish")
@ -36,6 +39,14 @@ class Trinity(MakefilePackage):
# There is no documented list of these deps, but they're in the Dockerfile
# and we have runtime errors without them
# https://github.com/trinityrnaseq/trinityrnaseq/blob/master/Docker/Dockerfile
depends_on("r-dexseq", type="run", when="@2.12")
depends_on("star", type="run", when="@2.12")
depends_on("picard", type="run", when="@2.12")
depends_on("subread", type="run", when="@2.12")
depends_on("gatk", type="run", when="@2.12")
depends_on("gmap-gsnap", type="run", when="@2.12")
depends_on("r-tximport", type="run", when="@2.12")
depends_on("r-tximportdata", type="run", when="@2.12")
depends_on("blast-plus", type="run")
depends_on("bowtie", type="run")
depends_on("r", type="run")