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update Samtools, bcftools, and htslib versions (#35043)

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* samtools: add version 1.6.1
* htslib: update version to 1.6
* bcftools: update version to 1.6
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downloadico 2023-01-23 13:13:05 -07:00 committed by GitHub
parent b9e196e40c
commit c2d68975bc
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3 changed files with 6 additions and 3 deletions
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3
var/spack/repos/builtin/packages/bcftools/package.py
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@ -1,4 +1,4 @@
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
@ -16,6 +16,7 @@ class Bcftools(AutotoolsPackage):
homepage = "https://samtools.github.io/bcftools/"
url = "https://github.com/samtools/bcftools/releases/download/1.3.1/bcftools-1.3.1.tar.bz2"
version("1.16", sha256="293010736b076cf684d2873928924fcc3d2c231a091084c2ac23a8045c7df982")
version("1.15.1", sha256="f21f9564873eb27ccf22d13b91a64acb8fbbfe4f9e4c37933a54b9a95857f2d7")
version("1.14", sha256="b7ef88ae89fcb55658c5bea2e8cb8e756b055e13860036d6be13756782aa19cb")
version("1.13", sha256="13bfa1da2a5edda8fa51196a47a0b4afb3fef17516451e4f0e78477f3dd30b90")

3
var/spack/repos/builtin/packages/htslib/package.py
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@ -1,4 +1,4 @@
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
@ -12,6 +12,7 @@ class Htslib(AutotoolsPackage):
homepage = "https://github.com/samtools/htslib"
url = "https://github.com/samtools/htslib/releases/download/1.13/htslib-1.13.tar.bz2"
version("1.16", sha256="606b7c7aff73734cf033ecd156f40529fa5792f54524952a28938ca0890d7924")
version("1.15.1", sha256="8d7f8bf9658226942eeab70af2a22aca618577eaa8fe2ed9416ee306d5351aa1")
version("1.15", sha256="1a9f49911503a22f56817cc82ea9b87fb7e7467b5ff989ca5aa61c12e7d532d9")
version("1.14", sha256="ed221b8f52f4812f810eebe0cc56cd8355a5c9d21c62d142ac05ad0da147935f")

3
var/spack/repos/builtin/packages/samtools/package.py
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@ -1,4 +1,4 @@
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
@ -41,6 +41,7 @@ class Samtools(Package):
depends_on("python", type="run")
# htslib became standalone @1.3.1, must use corresponding version
depends_on("htslib@1.16", when="@1.16.1")
depends_on("htslib@1.15.1", when="@1.15.1")
depends_on("htslib@1.15", when="@1.15")
depends_on("htslib@1.14", when="@1.14")