zhangyiss/spack
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

update bbmap (#12721)

Browse Source 
* update bbmap

* remove one extra comment line
This commit is contained in:
xfzhao 2019-09-09 12:55:06 -05:00 committed by Adam J. Stewart
parent 62f0286f5e
commit c30f9c6833
1 changed files with 6 additions and 1 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

7
var/spack/repos/builtin/packages/bbmap/package.py
View File

@ -10,11 +10,16 @@ class Bbmap(Package):
"""Short read aligner for DNA and RNA-seq data.""" """Short read aligner for DNA and RNA-seq data."""
homepage = "http://sourceforge.net/projects/bbmap/" homepage = "http://sourceforge.net/projects/bbmap/"
url = "https://downloads.sourceforge.net/project/bbmap/BBMap_37.36.tar.gz" url = "https://downloads.sourceforge.net/project/bbmap/BBMap_38.63.tar.gz"
version('38.63', sha256='089064104526c8d696164aefa067f935b888bc71ef95527c72a98c17ee90a01f')
version('37.36', '1e1086e1fae490a7d03c5a065b1c262f') version('37.36', '1e1086e1fae490a7d03c5a065b1c262f')
depends_on('java') depends_on('java')
def install(self, spec, prefix): def install(self, spec, prefix):
install_tree('.', prefix.bin) install_tree('.', prefix.bin)
def setup_environment(self, spack_env, run_env):
run_env.set('BBMAP_CONFIG', self.prefix.bin.config)
run_env.set('BBMAP_RESOURCES', self.prefix.bin.resources)