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Bump samtools, hstlib and bcftools to version 1.8. (#8020)

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* Bump samtools and hstlib to version 1.8.

* rm .bak.

* Bump bcftools to 1.8.

* bcftools@1.8 depends on libzip.
This commit is contained in:
健美猫 2018-05-05 05:27:54 +08:00 committed by Adam J. Stewart
parent 490cde87dd
commit c53541e448
3 changed files with 7 additions and 0 deletions
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4
var/spack/repos/builtin/packages/bcftools/package.py
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@ -34,12 +34,16 @@ class Bcftools(AutotoolsPackage):
homepage = "http://samtools.github.io/bcftools/"
url = "https://github.com/samtools/bcftools/releases/download/1.3.1/bcftools-1.3.1.tar.bz2"
version('1.8', 'ba6c2fb7eb6dcb208f00ab8b22df475c')
version('1.7', 'c972db68d17af9da3a18963f4e5aeca8')
version('1.6', 'c4dba1e8cb55db0f94b4c47724b4f9fa')
version('1.4', '50ccf0a073bd70e99cdb3c8be830416e')
version('1.3.1', '575001e9fca37cab0c7a7287ad4b1cdb')
version('1.2', '8044bed8fce62f7072fc6835420f0906')
depends_on('libzip', when='@1.8:')
depends_on('htslib@1.8', when='@1.8')
depends_on('htslib@1.7', when='@1.7')
depends_on('htslib@1.6', when='@1.6')
depends_on('htslib@1.4', when='@1.4')

1
var/spack/repos/builtin/packages/htslib/package.py
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@ -30,6 +30,7 @@ class Htslib(AutotoolsPackage):
homepage = "https://github.com/samtools/htslib"
version('1.8', '54e9b3a04251fa59b1878f6b546b5c79')
version('1.7', 'd3cc7e080a9a8c4161d8f62b56d3b98d')
version('1.6', 'd6fd14e208aca7e08cbe9072233d0af9')
version('1.4', '2a22ff382654c033c40e4ec3ea880050')

2
var/spack/repos/builtin/packages/samtools/package.py
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@ -33,6 +33,7 @@ class Samtools(Package):
homepage = "www.htslib.org"
url = "https://github.com/samtools/samtools/releases/download/1.3.1/samtools-1.3.1.tar.bz2"
version('1.8', 'c6e981c92ca00a44656a708c4b52aba3')
version('1.7', '2240175242b5183bfa6baf1483f68023')
version('1.6', 'b756f05fd5d1a7042074417edb8c9aea')
version('1.4', '8cbd7d2a0ec16d834babcd6c6d85d691')
@ -41,6 +42,7 @@ class Samtools(Package):
depends_on('ncurses')
# htslib became standalone @1.3.1, must use corresponding version
depends_on('htslib@1.8', when='@1.8')
depends_on('htslib@1.7', when='@1.7')
depends_on('htslib@1.6', when='@1.6')
depends_on('htslib@1.4', when='@1.4')