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The py-pytables package depends on hdf5-blosc (#11823)

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* The py-pytables package depends on hdf5-blosc

* Further modifications to py-pytables package

The 3.2.2 version of py-pytables should still build with internal blosc.
The issue with locking in a multithreaded environment has been
fixed/worked around in version 3.3.

Also, add bzip2 and lzo variants.
This commit is contained in:
Glenn Johnson 2019-06-24 16:56:51 -05:00 committed by Elizabeth Fischer
parent 1ec3d78441
commit c575cc46db
1 changed files with 16 additions and 0 deletions
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16
var/spack/repos/builtin/packages/py-pytables/package.py
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@ -17,6 +17,16 @@ class PyPytables(PythonPackage):
version('3.2.2', '7cbb0972e4d6580f629996a5bed92441', version('3.2.2', '7cbb0972e4d6580f629996a5bed92441',
url='https://github.com/PyTables/PyTables/archive/v.3.2.2.tar.gz') url='https://github.com/PyTables/PyTables/archive/v.3.2.2.tar.gz')
variant('bzip2', default=False, description='Support for bzip2 compression')
variant('lzo', default=False, description='Support for lzo compression')
depends_on('bzip2', when='+bzip2')
depends_on('lzo', when='+lzo')
# Versions prior to 3.3 must build with the internal blosc due to a lock
# problem in a multithreaded environment.
depends_on('hdf5-blosc', when="@3.3.0:")
depends_on('hdf5@1.8.0:1.8.999', when="@:3.3.99") depends_on('hdf5@1.8.0:1.8.999', when="@:3.3.99")
depends_on('hdf5@1.8.0:1.10.999', when="@3.4.0:") depends_on('hdf5@1.8.0:1.10.999', when="@3.4.0:")
depends_on('py-numpy@1.8.0:', type=('build', 'run')) depends_on('py-numpy@1.8.0:', type=('build', 'run'))
@ -27,3 +37,9 @@ class PyPytables(PythonPackage):
def setup_environment(self, spack_env, run_env): def setup_environment(self, spack_env, run_env):
spack_env.set('HDF5_DIR', self.spec['hdf5'].prefix) spack_env.set('HDF5_DIR', self.spec['hdf5'].prefix)
if '+bzip2' in self.spec:
spack_env.set('BZIP2_DIR', self.spec['bzip2'].prefix)
if '+lzo' in self.spec:
spack_env.set('LZO_DIR', self.spec['lzo'].prefix)
if '+hdf5-blosc' in self.spec:
spack_env.set('BLOSC_DIR', self.spec['c-blosc'].prefix)