From c62cc6a45d96b49533e1a5fff51aa045af255ace Mon Sep 17 00:00:00 2001 From: Derek Ryan Strong Date: Tue, 22 Apr 2025 11:52:31 -0700 Subject: [PATCH] rsem: add zlib dependency (#50102) --- var/spack/repos/builtin/packages/rsem/package.py | 8 +++++--- 1 file changed, 5 insertions(+), 3 deletions(-) diff --git a/var/spack/repos/builtin/packages/rsem/package.py b/var/spack/repos/builtin/packages/rsem/package.py index c8a615e0c94..cda8706c462 100644 --- a/var/spack/repos/builtin/packages/rsem/package.py +++ b/var/spack/repos/builtin/packages/rsem/package.py @@ -18,15 +18,17 @@ class Rsem(MakefilePackage): version("1.3.1", sha256="93c749a03ac16e94b1aab94d032d4fd5687d3261316ce943ecb89d3ae3ec2e11") version("1.3.0", sha256="ecfbb79c23973e1c4134f05201f4bd89b0caf0ce4ae1ffd7c4ddc329ed4e05d2") - depends_on("c", type="build") # generated - depends_on("cxx", type="build") # generated - + depends_on("c", type="build") + depends_on("cxx", type="build") depends_on("r", type=("build", "run")) depends_on("perl", type=("build", "run")) depends_on("python", type=("build", "run")) depends_on("bowtie") depends_on("bowtie2") depends_on("star") + # The bundled samtools-1.3/htslib-1.3 is not compatible with zlib-ng + # https://github.com/samtools/htslib/issues/1257 + depends_on("zlib") def install(self, spec, prefix): make("install", "DESTDIR=%s" % prefix, "prefix=")