Merge branch 'develop' into mplegendre-multi_pkgsrc_roots

Conflicts:
	lib/spack/spack/cmd/create.py
	lib/spack/spack/cmd/extensions.py
	lib/spack/spack/cmd/fetch.py
	lib/spack/spack/cmd/uninstall.py
	lib/spack/spack/config.py
	lib/spack/spack/database.py
	lib/spack/spack/directory_layout.py
	lib/spack/spack/packages.py
	lib/spack/spack/spec.py

.travis.yml

@@ -0,0 +1,26 @@
+language: python
+python:
+  - "2.6"
+  - "2.7"
+
+# Use new Travis infrastructure (Docker can't sudo yet)
+sudo: false
+
+# No need to install any deps.
+install: true
+
+before_install:
+  # Need this for the git tests to succeed.
+  - git config --global user.email "spack@example.com"
+  - git config --global user.name "Test User"
+
+script:
+  - . share/spack/setup-env.sh
+  - spack test
+
+notifications:
+  email:
+    recipients:
+      - tgamblin@llnl.gov
+    on_success: change
+    on_failure: always

LICENSE

@@ -5,7 +5,7 @@ This file is part of Spack.
 Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 LLNL-CODE-647188
 
-For details, see https://scalability-llnl.github.io/spack
+For details, see https://github.com/llnl/spack
 
 This program is free software; you can redistribute it and/or modify
 it under the terms of the GNU General Public License (as published by

README.md

@@ -1,6 +1,8 @@
 ![image](share/spack/logo/spack-logo-text-64.png "Spack")
 ============
 
+[![Build Status](https://travis-ci.org/LLNL/spack.png?branch=develop)](https://travis-ci.org/LLNL/spack)
+
 Spack is a package management tool designed to support multiple
 versions and configurations of software on a wide variety of platforms
 and environments. It was designed for large supercomputing centers,
@@ -17,20 +19,26 @@ written in pure Python, and specs allow package authors to write a
 single build script for many different builds of the same package.
 
 See the
-[Feature Overview](http://scalability-llnl.github.io/spack/features.html)
+[Feature Overview](http://llnl.github.io/spack/features.html)
 for examples and highlights.
 
 To install spack and install your first package:
 
-    $ git clone https://github.com/scalability-llnl/spack.git
+    $ git clone https://github.com/llnl/spack.git
     $ cd spack/bin
     $ ./spack install libelf
 
 Documentation
 ----------------
 
-[Full documentation](http://scalability-llnl.github.io/spack)
+[**Full documentation**](http://llnl.github.io/spack) for Spack is
-for Spack is also available.
+the first place to look.
+
+See also:
+  * [Technical paper](http://www.computer.org/csdl/proceedings/sc/2015/3723/00/2807623.pdf) and
+    [slides](https://tgamblin.github.io/files/Gamblin-Spack-SC15-Talk.pdf) on Spack's design and implementation.
+  * [Short presentation](https://tgamblin.github.io/files/Gamblin-Spack-Lightning-Talk-BOF-SC15.pdf) from the *Getting Scientific Software Installed* BOF session at Supercomputing 2015.
+
 
 Get Involved!
 ------------------------
@@ -62,10 +70,19 @@ latest stable release.
 
 Authors
 ----------------
-Many thanks go to Spack's [contributors](https://github.com/scalability-llnl/spack/graphs/contributors).
+Many thanks go to Spack's [contributors](https://github.com/llnl/spack/graphs/contributors).
 
 Spack was originally written by Todd Gamblin, tgamblin@llnl.gov.
 
+### Citing Spack
+
+If you are referencing Spack in a publication, please cite the following paper:
+
+ * Todd Gamblin, Matthew P. LeGendre, Michael R. Collette, Gregory L. Lee,
+   Adam Moody, Bronis R. de Supinski, and W. Scott Futral.
+   [**The Spack Package Manager: Bringing Order to HPC Software Chaos**](http://www.computer.org/csdl/proceedings/sc/2015/3723/00/2807623.pdf).
+   In *Supercomputing 2015 (SC’15)*, Austin, Texas, November 15-20 2015. LLNL-CONF-669890.
+
 Release
 ----------------
 Spack is released under an LGPL license.  For more details see the

bin/spack

@@ -7,7 +7,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
@@ -38,6 +38,23 @@ SPACK_PREFIX = os.path.dirname(os.path.dirname(SPACK_FILE))
 # Allow spack libs to be imported in our scripts
 SPACK_LIB_PATH = os.path.join(SPACK_PREFIX, "lib", "spack")
 sys.path.insert(0, SPACK_LIB_PATH)
+SPACK_EXTERNAL_LIBS = os.path.join(SPACK_LIB_PATH, "external")
+sys.path.insert(0, SPACK_EXTERNAL_LIBS)
+
+# Quick and dirty check to clean orphaned .pyc files left over from
+# previous revisions.  These files were present in earlier versions of
+# Spack, were removed, but shadow system modules that Spack still
+# imports.  If we leave them, Spack will fail in mysterious ways.
+# TODO: more elegant solution for orphaned pyc files.
+orphaned_pyc_files = [os.path.join(SPACK_EXTERNAL_LIBS, n)
+                      for n in ('functools.pyc', 'ordereddict.pyc')]
+for pyc_file in orphaned_pyc_files:
+    if not os.path.exists(pyc_file):
+        continue
+    try:
+        os.remove(pyc_file)
+    except OSError as e:
+        print "WARNING: Spack may fail mysteriously. Couldn't remove orphaned .pyc file: %s" % pyc
 
 # If there is no working directory, use the spack prefix.
 try:
@@ -72,6 +89,8 @@ spec expressions:
 
 parser.add_argument('-d', '--debug', action='store_true',
                     help="Write out debug logs during compile")
+parser.add_argument('-D', '--pdb', action='store_true',
+                    help="Run spack under the pdb debugger")
 parser.add_argument('-k', '--insecure', action='store_true',
                     help="Do not check ssl certificates when downloading.")
 parser.add_argument('-m', '--mock', action='store_true',
@@ -131,7 +150,7 @@ def main():
         sys.stderr.write('\n')
         tty.die("Keyboard interrupt.")
 
-    # Allow commands to return values if they want to exit with some ohter code.
+    # Allow commands to return values if they want to exit with some other code.
     if return_val is None:
         sys.exit(0)
     elif isinstance(return_val, int):
@@ -142,5 +161,8 @@ def main():
 if args.profile:
     import cProfile
     cProfile.run('main()', sort='tottime')
+elif args.pdb:
+    import pdb
+    pdb.run('main()')
 else:
     main()

bin/spack-python

@@ -7,7 +7,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify

lib/spack/docs/conf.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
@@ -43,6 +43,7 @@
 # add these directories to sys.path here. If the directory is relative to the
 # documentation root, use os.path.abspath to make it absolute, like shown here.
 sys.path.insert(0, os.path.abspath('exts'))
+sys.path.insert(0, os.path.abspath('../external'))
 
 # Add the Spack bin directory to the path so that we can use its output in docs.
 spack_root = '../../..'

lib/spack/docs/exts/sphinxcontrib/__init__.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify

lib/spack/docs/exts/sphinxcontrib/programoutput.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify

lib/spack/docs/getting_started.rst

@@ -5,11 +5,11 @@ Download
 --------------------
 
 Getting spack is easy.  You can clone it from the `github repository
-<https://github.com/scalability-llnl/spack>`_ using this command:
+<https://github.com/llnl/spack>`_ using this command:
 
 .. code-block:: sh
 
-   $ git clone https://github.com/scalability-llnl/spack.git
+   $ git clone https://github.com/llnl/spack.git
 
 This will create a directory called ``spack``.  We'll assume that the
 full path to this directory is in the ``SPACK_ROOT`` environment
@@ -22,7 +22,7 @@ go:
    $ spack install libelf
 
 For a richer experience, use Spack's `shell support
-<http://scalability-llnl.github.io/spack/basic_usage.html#environment-modules>`_:
+<http://llnl.github.io/spack/basic_usage.html#environment-modules>`_:
 
 .. code-block:: sh
 

lib/spack/docs/index.rst

@@ -24,12 +24,12 @@ maintain a single file for many different builds of the same package.
 See the :doc:`features` for examples and highlights.
 
 Get spack from the `github repository
-<https://github.com/scalability-llnl/spack>`_ and install your first
+<https://github.com/llnl/spack>`_ and install your first
 package:
 
 .. code-block:: sh
 
-   $ git clone https://github.com/scalability-llnl/spack.git
+   $ git clone https://github.com/llnl/spack.git
    $ cd spack/bin
    $ ./spack install libelf
 

lib/spack/env/cc

@@ -7,7 +7,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
@@ -86,22 +86,22 @@ done
 #
 command=$(basename "$0")
 case "$command" in
-    cc|gcc|c89|c99|clang|xlc)
+    cc|c89|c99|gcc|clang|icc|pgcc|xlc)
         command="$SPACK_CC"
         language="C"
         ;;
-    c++|CC|g++|clang++|xlC)
+    c++|CC|g++|clang++|icpc|pgCC|xlc++)
         command="$SPACK_CXX"
         language="C++"
         ;;
-    f77|xlf)
+    f90|fc|f95|gfortran|ifort|pgf90|xlf90)
-        command="$SPACK_F77"
-        language="Fortran 77"
-        ;;
-    fc|f90|f95|xlf90)
         command="$SPACK_FC"
         language="Fortran 90"
         ;;
+    f77|gfortran|ifort|pgf77|xlf)
+        command="$SPACK_F77"
+        language="Fortran 77"
+        ;;
     cpp)
         mode=cpp
         ;;

lib/spack/env/clang/clang

@@ -0,0 +1 @@
+../cc

lib/spack/env/clang/clang++

@@ -0,0 +1 @@
+../cc

lib/spack/env/gcc/g++

@@ -0,0 +1 @@
+../cc

lib/spack/env/gcc/gcc

@@ -0,0 +1 @@
+../cc

lib/spack/env/gcc/gfortran

@@ -0,0 +1 @@
+../cc

lib/spack/env/intel/icc

@@ -0,0 +1 @@
+../cc

lib/spack/env/intel/icpc

@@ -0,0 +1 @@
+../cc

lib/spack/env/intel/ifort

@@ -0,0 +1 @@
+../cc

lib/spack/env/pgi/case-insensitive/pgCC

@@ -0,0 +1 @@
+../../cc

lib/spack/env/pgi/pgcc

@@ -0,0 +1 @@
+../cc

lib/spack/env/pgi/pgf77

@@ -0,0 +1 @@
+../cc

lib/spack/env/pgi/pgf90

@@ -0,0 +1 @@
+../cc

lib/spack/env/xl/xlc

@@ -0,0 +1 @@
+../cc

lib/spack/env/xl/xlc++

@@ -0,0 +1 @@
+../cc

lib/spack/env/xl/xlf

@@ -0,0 +1 @@
+../cc

lib/spack/env/xl/xlf90

@@ -0,0 +1 @@
+../cc

lib/spack/external/__init__.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify

lib/spack/external/pyqver2.py

@@ -30,7 +30,8 @@
 StandardModules = {
     "__future__":       (2, 1),
     "abc":              (2, 6),
-    "argparse":         (2, 7),
+# skip argparse now that it's in lib/spack/external
+#    "argparse":         (2, 7),
     "ast":              (2, 6),
     "atexit":           (2, 0),
     "bz2":              (2, 3),

lib/spack/llnl/util/filesystem.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify

lib/spack/llnl/util/lang.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
@@ -113,7 +113,7 @@ def partition_list(elements, predicate):
 
 def caller_locals():
     """This will return the locals of the *parent* of the caller.
-       This allows a fucntion to insert variables into its caller's
+       This allows a function to insert variables into its caller's
        scope.  Yes, this is some black magic, and yes it's useful
        for implementing things like depends_on and provides.
     """

lib/spack/llnl/util/link_tree.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify

lib/spack/llnl/util/lock.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify

lib/spack/llnl/util/tty/__init__.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify

lib/spack/llnl/util/tty/colify.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify

lib/spack/llnl/util/tty/color.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify

lib/spack/llnl/util/tty/log.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify

lib/spack/spack/__init__.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
@@ -25,6 +25,7 @@
 import os
 import sys
 import tempfile
+import getpass
 from llnl.util.filesystem import *
 import llnl.util.tty as tty
 
@@ -122,9 +123,17 @@
 # that it can create.
 tmp_dirs = []
 _default_tmp = tempfile.gettempdir()
-if _default_tmp != os.getcwd():
+_tmp_user = getpass.getuser()
-    tmp_dirs.append(os.path.join(_default_tmp, 'spack-stage'))
+
-tmp_dirs.append('/nfs/tmp2/%u/spack-stage')
+_tmp_candidates = (_default_tmp, '/nfs/tmp2', '/tmp', '/var/tmp')
+for path in _tmp_candidates:
+    # don't add a second username if it's already unique by user.
+    if not _tmp_user in path:
+        tmp_dirs.append(join_path(path, '%u', 'spack-stage'))
+
+for path in _tmp_candidates:
+    if not path in tmp_dirs:
+        tmp_dirs.append(join_path(path, 'spack-stage'))
 
 # Whether spack should allow installation of unsafe versions of
 # software.  "Unsafe" versions are ones it doesn't have a checksum

lib/spack/spack/architecture.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify

lib/spack/spack/build_environment.py

@@ -88,10 +88,14 @@ def set_compiler_environment_variables(pkg):
     compiler = pkg.compiler
 
     # Set compiler variables used by CMake and autotools
-    os.environ['CC']  = join_path(spack.build_env_path, 'cc')
+    assert all(key in pkg.compiler.link_paths
-    os.environ['CXX'] = join_path(spack.build_env_path, 'c++')
+               for key in ('cc', 'cxx', 'f77', 'fc'))
-    os.environ['F77'] = join_path(spack.build_env_path, 'f77')
+
-    os.environ['FC']  = join_path(spack.build_env_path, 'f90')
+    link_dir = spack.build_env_path
+    os.environ['CC']  = join_path(link_dir, pkg.compiler.link_paths['cc'])
+    os.environ['CXX'] = join_path(link_dir, pkg.compiler.link_paths['cxx'])
+    os.environ['F77'] = join_path(link_dir, pkg.compiler.link_paths['f77'])
+    os.environ['FC']  = join_path(link_dir, pkg.compiler.link_paths['fc'])
 
     # Set SPACK compiler variables so that our wrapper knows what to call
     if compiler.cc:
@@ -110,11 +114,23 @@ def set_build_environment_variables(pkg):
     """This ensures a clean install environment when we build packages.
     """
     # Add spack build environment path with compiler wrappers first in
-    # the path.  We handle case sensitivity conflicts like "CC" and
+    # the path. We add both spack.env_path, which includes default
-    # "cc" by putting one in the <build_env_path>/case-insensitive
+    # wrappers (cc, c++, f77, f90), AND a subdirectory containing
+    # compiler-specific symlinks.  The latter ensures that builds that
+    # are sensitive to the *name* of the compiler see the right name
+    # when we're building wtih the wrappers.
+    #
+    # Conflicts on case-insensitive systems (like "CC" and "cc") are
+    # handled by putting one in the <build_env_path>/case-insensitive
     # directory.  Add that to the path too.
-    env_paths = [spack.build_env_path,
+    env_paths = []
-                 join_path(spack.build_env_path, 'case-insensitive')]
+    def add_env_path(path):
+        env_paths.append(path)
+        ci = join_path(path, 'case-insensitive')
+        if os.path.isdir(ci): env_paths.append(ci)
+    add_env_path(spack.build_env_path)
+    add_env_path(join_path(spack.build_env_path, pkg.compiler.name))
+
     path_put_first("PATH", env_paths)
     path_set(SPACK_ENV_PATH, env_paths)
 
@@ -129,7 +145,7 @@ def set_build_environment_variables(pkg):
     # Install root prefix
     os.environ[SPACK_INSTALL] = spack.install_path
 
-    # Remove these vars from the environment during build becaus they
+    # Remove these vars from the environment during build because they
     # can affect how some packages find libraries.  We want to make
     # sure that builds never pull in unintended external dependencies.
     pop_keys(os.environ, "LD_LIBRARY_PATH", "LD_RUN_PATH", "DYLD_LIBRARY_PATH")

lib/spack/spack/cmd/__init__.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify

lib/spack/spack/cmd/activate.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
@@ -22,7 +22,7 @@
 # along with this program; if not, write to the Free Software Foundation,
 # Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
 ##############################################################################
-from external import argparse
+import argparse
 import llnl.util.tty as tty
 import spack
 import spack.cmd

lib/spack/spack/cmd/arch.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify

lib/spack/spack/cmd/bootstrap.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify

lib/spack/spack/cmd/cd.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify

lib/spack/spack/cmd/checksum.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
@@ -24,7 +24,7 @@
 ##############################################################################
 import os
 import re
-from external import argparse
+import argparse
 import hashlib
 from pprint import pprint
 from subprocess import CalledProcessError

lib/spack/spack/cmd/clean.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
@@ -22,7 +22,7 @@
 # along with this program; if not, write to the Free Software Foundation,
 # Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
 ##############################################################################
-from external import argparse
+import argparse
 
 import llnl.util.tty as tty
 

lib/spack/spack/cmd/compiler.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
@@ -22,7 +22,7 @@
 # along with this program; if not, write to the Free Software Foundation,
 # Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
 ##############################################################################
-from external import argparse
+import argparse
 
 import llnl.util.tty as tty
 from llnl.util.tty.color import colorize

lib/spack/spack/cmd/compilers.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify

lib/spack/spack/cmd/config.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
@@ -23,7 +23,7 @@
 # Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
 ##############################################################################
 import sys
-from external import argparse
+import argparse
 
 import llnl.util.tty as tty
 

lib/spack/spack/cmd/create.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
@@ -27,15 +27,15 @@
 import hashlib
 import re
 
-from external.ordereddict import OrderedDict
+from ordereddict_backport import OrderedDict
 import llnl.util.tty as tty
 from llnl.util.filesystem import mkdirp
 
 import spack
 import spack.cmd
 import spack.cmd.checksum
-import spack.package
 import spack.url
+import spack.util.web
 from spack.util.naming import *
 import spack.util.crypto as crypto
 
@@ -178,7 +178,7 @@ def create(parser, args):
     else:
         mkdirp(os.path.dirname(pkg_path))
 
-    versions = spack.package.find_versions_of_archive(url)
+    versions = spack.util.web.find_versions_of_archive(url)
     rkeys = sorted(versions.keys(), reverse=True)
     versions = OrderedDict(zip(rkeys, (versions[v] for v in rkeys)))
 

lib/spack/spack/cmd/deactivate.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
@@ -22,7 +22,7 @@
 # along with this program; if not, write to the Free Software Foundation,
 # Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
 ##############################################################################
-from external import argparse
+import argparse
 import llnl.util.tty as tty
 
 import spack

lib/spack/spack/cmd/dependents.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
@@ -22,7 +22,7 @@
 # along with this program; if not, write to the Free Software Foundation,
 # Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
 ##############################################################################
-from external import argparse
+import argparse
 
 import llnl.util.tty as tty
 

lib/spack/spack/cmd/diy.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
@@ -24,7 +24,7 @@
 ##############################################################################
 import sys
 import os
-from external import argparse
+import argparse
 
 import llnl.util.tty as tty
 

lib/spack/spack/cmd/doc.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify

lib/spack/spack/cmd/edit.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify

lib/spack/spack/cmd/env.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
@@ -23,7 +23,7 @@
 # Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
 ##############################################################################
 import os
-from external import argparse
+import argparse
 import llnl.util.tty as tty
 import spack.cmd
 import spack.build_environment as build_env

lib/spack/spack/cmd/extensions.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
@@ -23,7 +23,7 @@
 # Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
 ##############################################################################
 import sys
-from external import argparse
+import argparse
 
 import llnl.util.tty as tty
 from llnl.util.tty.colify import colify
@@ -37,7 +37,7 @@
 def setup_parser(subparser):
     format_group = subparser.add_mutually_exclusive_group()
     format_group.add_argument(
-        '-l', '--long', action='store_const', dest='mode', const='long',
+        '-l', '--long', action='store_true', dest='long',
         help='Show dependency hashes as well as versions.')
     format_group.add_argument(
         '-p', '--paths', action='store_const', dest='mode', const='paths',
@@ -54,7 +54,9 @@ def extensions(parser, args):
     if not args.spec:
         tty.die("extensions requires a package spec.")
 
+    #
     # Checks
+    #
     spec = spack.cmd.parse_specs(args.spec)
     if len(spec) > 1:
         tty.die("Can only list extensions for one package.")
@@ -70,6 +72,7 @@ def extensions(parser, args):
     if not args.mode:
         args.mode = 'short'
 
+    #
     # List package names of extensions
     extensions = spack.repo.extensions_for(spec)
     if not extensions:
@@ -79,7 +82,9 @@ def extensions(parser, args):
     tty.msg("%d extensions:" % len(extensions))
     colify(ext.name for ext in extensions)
 
+    #
     # List specs of installed extensions.
+    #
     installed = [s.spec for s in spack.installed_db.installed_extensions_for(spec)]
     print
     if not installed:
@@ -88,11 +93,13 @@ def extensions(parser, args):
     tty.msg("%d installed:" % len(installed))
     spack.cmd.find.display_specs(installed, mode=args.mode)
 
+    #
     # List specs of activated extensions.
+    #
     activated = spack.install_layout.extension_map(spec)
     print
     if not activated:
         tty.msg("None activated.")
         return
     tty.msg("%d currently activated:" % len(activated))
-    spack.cmd.find.display_specs(activated.values(), mode=args.mode)
+    spack.cmd.find.display_specs(activated.values(), mode=args.mode, long=args.long)

lib/spack/spack/cmd/fetch.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
@@ -22,7 +22,7 @@
 # along with this program; if not, write to the Free Software Foundation,
 # Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
 ##############################################################################
-from external import argparse
+import argparse
 
 import spack
 import spack.cmd
@@ -33,10 +33,13 @@ def setup_parser(subparser):
     subparser.add_argument(
         '-n', '--no-checksum', action='store_true', dest='no_checksum',
         help="Do not check packages against checksum")
+    subparser.add_argument(
+        '-m', '--missing', action='store_true', help="Also fetch all missing dependencies")
+    subparser.add_argument(
+        '-D', '--dependencies', action='store_true', help="Also fetch all dependencies")
     subparser.add_argument(
         'packages', nargs=argparse.REMAINDER, help="specs of packages to fetch")
 
-
 def fetch(parser, args):
     if not args.packages:
         tty.die("fetch requires at least one package argument")
@@ -46,5 +49,13 @@ def fetch(parser, args):
 
     specs = spack.cmd.parse_specs(args.packages, concretize=True)
     for spec in specs:
+        if args.missing or args.dependencies:
+            to_fetch = set()
+            for s in spec.traverse():
+                package = spack.repo.get(s)
+                if args.missing and package.installed:
+                    continue
+                package.do_fetch()
+
         package = spack.repo.get(spec)
         package.do_fetch()

lib/spack/spack/cmd/find.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
@@ -25,7 +25,7 @@
 import sys
 import collections
 import itertools
-from external import argparse
+import argparse
 from StringIO import StringIO
 
 import llnl.util.tty as tty

lib/spack/spack/cmd/graph.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
@@ -22,7 +22,7 @@
 # along with this program; if not, write to the Free Software Foundation,
 # Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
 ##############################################################################
-from external import argparse
+import argparse
 
 import spack
 import spack.cmd

lib/spack/spack/cmd/help.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify

lib/spack/spack/cmd/info.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify

lib/spack/spack/cmd/install.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
@@ -22,7 +22,7 @@
 # along with this program; if not, write to the Free Software Foundation,
 # Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
 ##############################################################################
-from external import argparse
+import argparse
 
 import llnl.util.tty as tty
 

lib/spack/spack/cmd/list.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
@@ -24,7 +24,7 @@
 ##############################################################################
 import sys
 import llnl.util.tty as tty
-from external import argparse
+import argparse
 from llnl.util.tty.colify import colify
 
 import spack

lib/spack/spack/cmd/load.py

@@ -6,7 +6,7 @@
 # Written by David Beckingsale, david@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
@@ -22,7 +22,7 @@
 # along with this program; if not, write to the Free Software Foundation,
 # Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
 ##############################################################################
-from external import argparse
+import argparse
 import spack.modules
 
 description ="Add package to environment using modules."

lib/spack/spack/cmd/location.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
@@ -24,7 +24,7 @@
 ##############################################################################
 import os
 import sys
-from external import argparse
+import argparse
 
 import llnl.util.tty as tty
 from llnl.util.filesystem import join_path

lib/spack/spack/cmd/md5.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
@@ -24,7 +24,7 @@
 ##############################################################################
 import os
 import hashlib
-from external import argparse
+import argparse
 
 import llnl.util.tty as tty
 from llnl.util.filesystem import *

lib/spack/spack/cmd/mirror.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
@@ -26,7 +26,7 @@
 import sys
 from datetime import datetime
 
-from external import argparse
+import argparse
 import llnl.util.tty as tty
 from llnl.util.tty.colify import colify
 
@@ -54,6 +54,8 @@ def setup_parser(subparser):
         'specs', nargs=argparse.REMAINDER, help="Specs of packages to put in mirror")
     create_parser.add_argument(
         '-f', '--file', help="File with specs of packages to put in mirror.")
+    create_parser.add_argument(
+        '-D', '--dependencies', action='store_true', help="Also fetch all dependencies")
     create_parser.add_argument(
         '-o', '--one-version-per-spec', action='store_const', const=1, default=0,
         help="Only fetch one 'preferred' version per spec, not all known versions.")
@@ -118,7 +120,7 @@ def mirror_create(args):
     """Create a directory to be used as a spack mirror, and fill it with
        package archives."""
     # try to parse specs from the command line first.
-    specs = spack.cmd.parse_specs(args.specs)
+    specs = spack.cmd.parse_specs(args.specs, concretize=True)
 
     # If there is a file, parse each line as a spec and add it to the list.
     if args.file:
@@ -131,6 +133,14 @@ def mirror_create(args):
         specs = [Spec(n) for n in spack.repo.all_package_names()]
         specs.sort(key=lambda s: s.format("$_$@").lower())
 
+    if args.dependencies:
+        new_specs = set()
+        for spec in specs:
+            spec.concretize()
+            for s in spec.traverse():
+                new_specs.add(s)
+        specs = list(new_specs)
+
     # Default name for directory is spack-mirror-<DATESTAMP>
     directory = args.directory
     if not directory:

lib/spack/spack/cmd/module.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
@@ -25,7 +25,7 @@
 import sys
 import os
 import shutil
-from external import argparse
+import argparse
 
 import llnl.util.tty as tty
 from llnl.util.lang import partition_list

lib/spack/spack/cmd/package-list.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
@@ -34,7 +34,7 @@
 
 def github_url(pkg):
     """Link to a package file on github."""
-    return ("https://github.com/scalability-llnl/spack/blob/master/var/spack/packages/%s/package.py" %
+    return ("https://github.com/llnl/spack/blob/master/var/spack/packages/%s/package.py" %
             pkg.name)
 
 

lib/spack/spack/cmd/patch.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
@@ -22,7 +22,7 @@
 # along with this program; if not, write to the Free Software Foundation,
 # Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
 ##############################################################################
-from external import argparse
+import argparse
 
 import spack.cmd
 import spack

lib/spack/spack/cmd/pkg.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
@@ -24,7 +24,7 @@
 ##############################################################################
 import os
 
-from external import argparse
+import argparse
 import llnl.util.tty as tty
 from llnl.util.tty.colify import colify
 

lib/spack/spack/cmd/providers.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
@@ -23,7 +23,7 @@
 # Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
 ##############################################################################
 import os
-from external import argparse
+import argparse
 
 from llnl.util.tty.colify import colify
 

lib/spack/spack/cmd/purge.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify

lib/spack/spack/cmd/python.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
@@ -25,12 +25,14 @@
 import os
 import sys
 import code
-from external import argparse
+import argparse
 import platform
 
 import spack
 
 def setup_parser(subparser):
+    subparser.add_argument(
+        '-c', dest='python_command', help='Command to execute.')
     subparser.add_argument(
         'python_args', nargs=argparse.REMAINDER, help="File to run plus arguments.")
 
@@ -38,7 +40,8 @@ def setup_parser(subparser):
 
 def python(parser, args):
     # Fake a main python shell by setting __name__ to __main__.
-    console = code.InteractiveConsole({'__name__' : '__main__'})
+    console = code.InteractiveConsole({'__name__' : '__main__',
+                                       'spack'    : spack})
 
     if "PYTHONSTARTUP" in os.environ:
         startup_file = os.environ["PYTHONSTARTUP"]
@@ -47,7 +50,10 @@ def python(parser, args):
                 console.runsource(startup.read(), startup_file, 'exec')
 
     python_args = args.python_args
-    if python_args:
+    python_command = args.python_command
+    if python_command:
+        console.runsource(python_command)
+    elif python_args:
         sys.argv = python_args
         with open(python_args[0]) as file:
             console.runsource(file.read(), python_args[0], 'exec')

lib/spack/spack/cmd/reindex.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
@@ -22,7 +22,7 @@
 # along with this program; if not, write to the Free Software Foundation,
 # Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
 ##############################################################################
-from external import argparse
+import argparse
 import spack
 
 description = "Rebuild Spack's package database."

lib/spack/spack/cmd/repo.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://llnl.github.io/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify

lib/spack/spack/cmd/restage.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
@@ -22,7 +22,7 @@
 # along with this program; if not, write to the Free Software Foundation,
 # Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
 ##############################################################################
-from external import argparse
+import argparse
 
 import llnl.util.tty as tty
 

lib/spack/spack/cmd/spec.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
@@ -22,7 +22,7 @@
 # along with this program; if not, write to the Free Software Foundation,
 # Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
 ##############################################################################
-from external import argparse
+import argparse
 import spack.cmd
 
 import llnl.util.tty as tty

lib/spack/spack/cmd/stage.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
@@ -23,7 +23,7 @@
 # Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
 ##############################################################################
 import os
-from external import argparse
+import argparse
 
 import llnl.util.tty as tty
 import spack

lib/spack/spack/cmd/test-install.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
@@ -22,7 +22,7 @@
 # along with this program; if not, write to the Free Software Foundation,
 # Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
 ##############################################################################
-from external import argparse
+import argparse
 import xml.etree.ElementTree as ET
 import itertools
 import re

lib/spack/spack/cmd/test.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify

lib/spack/spack/cmd/uninstall.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
@@ -23,7 +23,7 @@
 # Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
 ##############################################################################
 import sys
-from external import argparse
+import argparse
 
 import llnl.util.tty as tty
 from llnl.util.tty.colify import colify
@@ -42,9 +42,9 @@ def setup_parser(subparser):
         help="Remove regardless of whether other packages depend on this one.")
     subparser.add_argument(
         '-a', '--all', action='store_true', dest='all',
-        help="USE CAREFULLY.  Remove ALL installed packages that match each supplied spec. " +
+        help="USE CAREFULLY. Remove ALL installed packages that match each " +
-        "i.e., if you say uninstall libelf, ALL versions of libelf are uninstalled. " +
+        "supplied spec. i.e., if you say uninstall libelf, ALL versions of " +
-        "This is both useful and dangerous, like rm -r.")
+        "libelf are uninstalled. This is both useful and dangerous, like rm -r.")
     subparser.add_argument(
         'packages', nargs=argparse.REMAINDER, help="specs of packages to uninstall")
 
@@ -79,9 +79,9 @@ def uninstall(parser, args):
                 try:
                     # should work if package is known to spack
                     pkgs.append(s.package)
-
                 except spack.repository.UnknownPackageError, e:
-                    # The package.py file has gone away -- but still want to uninstall.
+                    # The package.py file has gone away -- but still
+                    # want to uninstall.
                     spack.Package(s).do_uninstall(force=True)
 
         # Sort packages to be uninstalled by the number of installed dependents

lib/spack/spack/cmd/unload.py

@@ -6,7 +6,7 @@
 # Written by David Beckingsale, david@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
@@ -22,7 +22,7 @@
 # along with this program; if not, write to the Free Software Foundation,
 # Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
 ##############################################################################
-from external import argparse
+import argparse
 import spack.modules
 
 description ="Remove package from environment using module."

lib/spack/spack/cmd/unuse.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
@@ -22,7 +22,7 @@
 # along with this program; if not, write to the Free Software Foundation,
 # Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
 ##############################################################################
-from external import argparse
+import argparse
 import spack.modules
 
 description ="Remove package from environment using dotkit."

lib/spack/spack/cmd/url-parse.py

@@ -0,0 +1,75 @@
+##############################################################################
+# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the LICENSE file for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License (as published by
+# the Free Software Foundation) version 2.1 dated February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public License
+# along with this program; if not, write to the Free Software Foundation,
+# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+import sys
+
+import llnl.util.tty as tty
+
+import spack
+import spack.url
+from spack.util.web import find_versions_of_archive
+
+description = "Show parsing of a URL, optionally spider web for other versions."
+
+def setup_parser(subparser):
+    subparser.add_argument('url', help="url of a package archive")
+    subparser.add_argument(
+        '-s', '--spider', action='store_true', help="Spider the source page for versions.")
+
+
+def print_name_and_version(url):
+    name, ns, nl, ntup, ver, vs, vl, vtup = spack.url.substitution_offsets(url)
+    underlines = [" "] * max(ns+nl, vs+vl)
+    for i in range(ns, ns+nl):
+        underlines[i] = '-'
+    for i in range(vs, vs+vl):
+        underlines[i] = '~'
+
+    print "    %s" % url
+    print "    %s" % ''.join(underlines)
+
+
+def url_parse(parser, args):
+    url = args.url
+
+    ver,  vs, vl = spack.url.parse_version_offset(url)
+    name, ns, nl = spack.url.parse_name_offset(url, ver)
+
+    tty.msg("Parsing URL:")
+    try:
+        print_name_and_version(url)
+    except spack.url.UrlParseError as e:
+        tty.error(str(e))
+
+    print
+    tty.msg("Substituting version 9.9.9b:")
+    newurl = spack.url.substitute_version(url, '9.9.9b')
+    print_name_and_version(newurl)
+
+    if args.spider:
+        print
+        tty.msg("Spidering for versions:")
+        versions = find_versions_of_archive(url)
+        for v in sorted(versions):
+            print "%-20s%s" % (v, versions[v])

lib/spack/spack/cmd/urls.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify

lib/spack/spack/cmd/use.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
@@ -22,7 +22,7 @@
 # along with this program; if not, write to the Free Software Foundation,
 # Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
 ##############################################################################
-from external import argparse
+import argparse
 import spack.modules
 
 description ="Add package to environment using dotkit."

lib/spack/spack/cmd/versions.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify

lib/spack/spack/compiler.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify

lib/spack/spack/compilers/__init__.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify

lib/spack/spack/compilers/clang.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
@@ -37,6 +37,12 @@ class Clang(Compiler):
     # Subclasses use possible names of Fortran 90 compiler
     fc_names = []
 
+    # Named wrapper links within spack.build_env_path
+    link_paths = { 'cc'  : 'clang/clang',
+                   'cxx' : 'clang/clang++',
+                   # Use default wrappers for fortran, in case provided in compilers.yaml
+                   'f77' : 'f77',
+                   'fc'  : 'f90' }
 
     @classmethod
     def default_version(self, comp):

lib/spack/spack/compilers/gcc.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
@@ -42,6 +42,12 @@ class Gcc(Compiler):
     # MacPorts builds gcc versions with prefixes and -mp-X.Y suffixes.
     suffixes = [r'-mp-\d\.\d']
 
+    # Named wrapper links within spack.build_env_path
+    link_paths = {'cc'  : 'gcc/gcc',
+                  'cxx' : 'gcc/g++',
+                  'f77' : 'gcc/gfortran',
+                  'fc'  : 'gcc/gfortran' }
+
     @property
     def cxx11_flag(self):
         if self.version < ver('4.3'):

lib/spack/spack/compilers/intel.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
@@ -37,6 +37,12 @@ class Intel(Compiler):
     # Subclasses use possible names of Fortran 90 compiler
     fc_names = ['ifort']
 
+    # Named wrapper links within spack.build_env_path
+    link_paths = { 'cc'  : 'intel/icc',
+                   'cxx' : 'intel/icpc',
+                   'f77' : 'intel/ifort',
+                   'fc'  : 'intel/ifort' }
+
     @property
     def cxx11_flag(self):
         if self.version < ver('11.1'):

lib/spack/spack/compilers/pgi.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
@@ -37,6 +37,12 @@ class Pgi(Compiler):
     # Subclasses use possible names of Fortran 90 compiler
     fc_names = ['pgf95', 'pgf90']
 
+    # Named wrapper links within spack.build_env_path
+    link_paths = { 'cc'  : 'pgi/pgcc',
+                   'cxx' : 'pgi/case-insensitive/pgCC',
+                   'f77' : 'pgi/pgf77',
+                   'fc'  : 'pgi/pgf90' }
+
     @classmethod
     def default_version(cls, comp):
         """The '-V' option works for all the PGI compilers.

lib/spack/spack/compilers/xl.py

@@ -7,7 +7,7 @@
 # Written by François Bissey, francois.bissey@canterbury.ac.nz, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
@@ -38,6 +38,12 @@ class Xl(Compiler):
     # Subclasses use possible names of Fortran 90 compiler
     fc_names = ['xlf90','xlf90_r','xlf95','xlf95_r','xlf2003','xlf2003_r','xlf2008','xlf2008_r']
 
+    # Named wrapper links within spack.build_env_path
+    link_paths = { 'cc'  : 'xl/xlc',
+                   'cxx' : 'xl/xlc++',
+                   'f77' : 'xl/xlf',
+                   'fc'  : 'xl/xlf90' }
+
     @property
     def cxx11_flag(self):
         if self.version < ver('13.1'):

lib/spack/spack/concretize.py

@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://github.com/llnl/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
@@ -40,7 +40,6 @@
 from spack.version import *
 
 
-
 class DefaultConcretizer(object):
     """This class doesn't have any state, it just provides some methods for
        concretization.  You can subclass it to override just some of the
@@ -68,9 +67,17 @@ def concretize_version(self, spec):
         # If there are known available versions, return the most recent
         # version that satisfies the spec
         pkg = spec.package
+
+        # Key function to sort versions first by whether they were
+        # marked `preferred=True`, then by most recent.
+        def preferred_key(v):
+            prefer = pkg.versions[v].get('preferred', False)
+            return (prefer, v)
+
         valid_versions = sorted(
             [v for v in pkg.versions
-             if any(v.satisfies(sv) for sv in spec.versions)])
+             if any(v.satisfies(sv) for sv in spec.versions)],
+            key=preferred_key)
 
         if valid_versions:
             spec.versions = ver([valid_versions[-1]])