Add ppOpen-APPL/FDM and ppOpen-APPL/FDM-AT. (#16116)

var/spack/repos/builtin/packages/ppopen-appl-fdm-at/package.py

@@ -0,0 +1,50 @@
+# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+import os
+
+
+class PpopenApplFdmAt(MakefilePackage):
+    """ppOpen-APPL/FDM with Auto-Tuning"""
+
+    homepage = "http://ppopenhpc.cc.u-tokyo.ac.jp/ppopenhpc/"
+    url      = "file://{0}/ppohFDM_AT_1.0.0.tar.gz".format(os.getcwd())
+
+    version('1.0.0', sha256='f6052b73250a41b2b319b27efc4d753c6ec1f67cd109b53099c2b240f7acd65a')
+
+    depends_on('mpi')
+    # depends_on('ppopen-appl-fdm', type='build')
+
+    build_directory = "3.hybrid_AT"
+    parallel = False
+
+    def edit(self, spec, prefix):
+        with working_dir(self.build_directory):
+            fflags = ['-O3', self.compiler.openmp_flag]
+            if spec.satisfies('%gcc'):
+                fflags.append('-ffree-line-length-none')
+            if spec.satisfies('arch=x86_64:'):
+                fflags.append('-mcmodel=medium')
+            makefile_opt = FileFilter('Makefile.option')
+            makefile_opt.filter(
+                'FC = .*$',
+                'FC = {0}'.format(spec['mpi'].mpifc)
+            )
+            makefile_opt.filter(
+                'FFLAGS = .*$',
+                'FFLAGS = -O3 {0}'.format(' '.join(fflags))
+            )
+
+    def install(self, spec, prefix):
+        mkdir(prefix.bin)
+        copy(join_path(self.build_directory, 'seism3d3n'), prefix.bin)
+        install_src_dir = join_path(prefix.src, self.build_directory)
+        mkdirp(install_src_dir)
+        install_tree(self.build_directory, install_src_dir)
+        with working_dir(install_src_dir):
+            make('clean')
+        mkdir(prefix.doc)
+        copy('readme.txt', prefix.doc)

var/spack/repos/builtin/packages/ppopen-appl-fdm/gfortran_iargc.patch

@@ -0,0 +1,13 @@
+diff --git a/tools/seismic_3D-tools/m_stdio.f90 b/tools/seismic_3D-tools/m_stdio.f90
+index bddb715..bc00f68 100644
+--- a/tools/seismic_3D-tools/m_stdio.f90
++++ b/tools/seismic_3D-tools/m_stdio.f90
+@@ -65,8 +65,6 @@ module stdio
+   real(PN), parameter :: DEG2RAD = PI/180._PN
+   real(PN), parameter :: RAD2DEG = 180.0_PN / PI
+ 
+-  integer, external :: iargc
+-
+ 
+   interface readPrm
+   !

var/spack/repos/builtin/packages/ppopen-appl-fdm/package.py

@@ -0,0 +1,137 @@
+# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+import os
+from spack import *
+
+
+class PpopenApplFdm(MakefilePackage):
+    """
+    ppOpen-APPL/FDM is a application software for the FDM simulation of
+    seismic wave propagation in elastic media in 2D and 3D.
+    The 2D application is prepared for a single-CPU (sequential) calculation
+    and the 3D application use MPI and OpenMP for parallel computing.
+    """
+
+    homepage = "http://ppopenhpc.cc.u-tokyo.ac.jp/ppopenhpc/"
+    url      = "file://{0}/ppohFDM_0.3.1.tar.gz".format(os.getcwd())
+
+    version('0.3.1', sha256='5db7c28ef2df43c0ffa28e542d92320fe3c8cd7551aabe1de64647191ddf7d0b')
+
+    # remove unused variable definition
+    patch('unused.patch')
+    # remove iargc external definition
+    # iargc is intrinsic in gfortran
+    patch('gfortran_iargc.patch')
+
+    depends_on('ppopen-math-vis', type='link')
+    depends_on('mpi')
+
+    parallel = False
+
+    def edit(self, spec, prefix):
+        makefile_in = FileFilter('Makefile.in')
+        makefile_in.filter('PREFIX += .*$', 'PREFIX = {0}'.format(prefix))
+        makefile_in.filter(
+            'LIBDIR = .*$',
+            'LIBDIR = {0}'.format(prefix)
+        )
+        makefile_in.filter(
+            'CC += .*$',
+            'CC = {0}'.format(spec['mpi'].mpicc)
+        )
+        makefile_in.filter('COPTFLAGS += .*$', 'COPTFLAGS = -O3')
+        makefile_in.filter(
+            'CXX += .*$',
+            'CXX = {0}'.format(spec['mpi'].mpicxx)
+        )
+        makefile_in.filter('CXXOPTFLAGS = .*$', 'CXXOPTFLAGS = -O3')
+        makefile_in.filter(
+            'FC += .*$',
+            'FC = {0}'.format(spec['mpi'].mpifc)
+        )
+        makefile_in.filter('FOPTFLAGS += .*$', 'FOPTFLAGS = -O3')
+        makefile_in.filter(
+            'F90 += .*$',
+            'F90 = {0}'.format(spec['mpi'].mpifc)
+        )
+        makefile_in.filter('F90OPTFLAGS += .*$', 'F90OPTFLAGS = -O3')
+
+        makefile_opt = FileFilter(join_path(
+            'src', 'seismic_2D', 'makefile.option')
+        )
+        makefile_opt.filter('FC = .*$', 'FC = {0}'.format(spack_fc))
+        makefile_opt.filter('FFLAGS = .*$', 'FFLAGS = -O3')
+
+        makefile = FileFilter(join_path(
+            'src', 'seismic_3D', '1.ppohFDM-ppohVIS', 'Makefile')
+        )
+        makefile.filter('LIBS += .*$', 'LIBS = ')
+        makefile.filter(
+            'FLDFLAGS += .*$',
+            'FLDFLAGS = ' + spec['ppopen-math-vis'].libs.ld_flags
+        )
+
+        makefile_opt = FileFilter(join_path(
+            'src', 'seismic_3D', '3.parallel', 'Makefile.option')
+        )
+        makefile_opt.filter('FC = .*$', 'FC = {0}'.format(spec['mpi'].mpifc))
+        makefile_opt.filter(
+            'FFLAGS = .*$',
+            'FFLAGS = -O3 {0}'.format(self.compiler.openmp_flag)
+        )
+
+        copy(
+            join_path('examples', 'seismic_3D-example', 'm_param.f90'),
+            join_path('src', 'seismic_3D', '1.ppohFDM-ppohVIS')
+        )
+        copy(
+            join_path('examples', 'seismic_3D-example', 'm_param.f90'),
+            join_path('src', 'seismic_3D', '3.parallel')
+        )
+
+        for makefile in find('tools', 'makefile', recursive=True):
+            fflags = ['-O3', '-I.']
+            m = FileFilter(makefile)
+            m.filter('^FC =.*$', 'FC = {0}'.format(spack_fc))
+            m.filter(
+                '^FFLAGS =.*$',
+                'FFLAGS = {0}'.format(' '.join(fflags))
+            )
+
+    def build(self, spec, prefix):
+        make('seism2d', 'seism3d-ppohVIS', 'seism3d-parallel')
+        for d in ['seismic_2D-tools', 'seismic_3D-tools']:
+            with working_dir(join_path('tools', d)):
+                make('all')
+
+    def install(self, spec, prefix):
+        commands = [
+            join_path('src', 'seismic_2D', 'seism2d_psv'),
+            join_path('src', 'seismic_3D', '3.parallel', 'seism3d3n'),
+            join_path('src', 'seismic_3D', '1.ppohFDM-ppohVIS', 'seism3d3n'),
+            join_path('tools', 'seismic_2D-tools', 'pmxy2d'),
+            join_path('tools', 'seismic_2D-tools', 'rwav2d'),
+            join_path('tools', 'seismic_3D-tools', 'catsnap'),
+            join_path('tools', 'seismic_3D-tools', 'catwav'),
+            join_path('tools', 'seismic_3D-tools', 'ppmxy3d3'),
+            join_path('tools', 'seismic_3D-tools', 'rwav3d'),
+        ]
+        mkdir(prefix.bin)
+        for command in commands:
+            copy(command, prefix.bin)
+        install_tree('examples', prefix.examples)
+        install_tree('doc', prefix.doc)
+        install_tree('src', prefix.src)
+        copy('Makefile.in', prefix)
+        clean_dir = [
+            join_path(prefix.src, 'seismic_2D'),
+            join_path(prefix.src, 'seismic_3D', '1.ppohFDM-ppohVIS'),
+            join_path(prefix.src, 'seismic_3D', '3.parallel'),
+        ]
+        for d in clean_dir:
+            with working_dir(d):
+                make('clean')
+        force_remove(join_path(prefix, 'Makefile.in'))

var/spack/repos/builtin/packages/ppopen-appl-fdm/unused.patch

@@ -0,0 +1,13 @@
+diff --git a/tools/seismic_2D-tools/rwav2d.f90 b/tools/seismic_2D-tools/rwav2d.f90
+index ec08ea8..0f9543c 100644
+--- a/tools/seismic_2D-tools/rwav2d.f90
++++ b/tools/seismic_2D-tools/rwav2d.f90
+@@ -41,7 +41,7 @@ program sort_seism2d_result
+ 
+   integer :: station_num
+   integer :: ns, isx, isz
+-  integer :: i, k, ii, kk, j, IT
++  integer :: i, k, ii, kk, j
+   character(len=80) filename, filename2, tmp1
+   integer  :: istx(5000,100), istz(5000,100), stnum(5000,100)
+   real(PN) :: ntime(5000,100), vxall(5000,100), vzall(5000,100)

var/spack/repos/builtin/packages/ppopen-math-vis/package.py

@@ -43,3 +43,9 @@ def install(self, spec, prefix):
         copy_tree('examples', join_path(prefix, 'examples'))
         mkdir(join_path(prefix, 'doc'))
         copy_tree('doc', join_path(prefix, 'doc'))
+
+    @property
+    def libs(self):
+        return find_libraries(
+            ['libfppohvisfdm3d', 'libppohvisfdm3d'],
+            root=self.prefix, shared=False, recursive=True)