zhangyiss/spack
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

Feature/py picrust New Package (#9096)

Browse Source 
* added py-picrust

* flake8 edits

* fixed boilerplate, added type='build', 'run'

* fixed errors

* added deps

* fixed error

* fixed numpy max version

* fixed future version

* fixed version issues
This commit is contained in:
Miles Perry 2018-09-03 20:58:49 -05:00 committed by Adam J. Stewart
parent ee14d273e5
commit cb9e8eda8f
1 changed files with 42 additions and 0 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

42
var/spack/repos/builtin/packages/py-picrust/package.py Normal file
View File

@ -0,0 +1,42 @@
##############################################################################
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/spack/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class PyPicrust(PythonPackage):
"""bioinformatics software package designed to predict metagenome
functional content from marker gene surveys and full genomes."""
homepage = "http://picrust.github.io/picrust/index.html"
url = "https://github.com/picrust/picrust/releases/download/v1.1.3/picrust-1.1.3.tar.gz"
version('1.1.3', sha256='7538c8544899b8855deb73a2d7a4ccac4808ff294e161530a8c8762d472d8906')
depends_on('python@2.7.15:2.999', type=('build', 'run'))
depends_on('py-cogent@1.5.3', type=('build', 'run'))
depends_on('py-biom-format@2.1.4:2.1.999', type=('build', 'run'))
depends_on('py-setuptools', type='build')
depends_on('py-future@0.16.0', type=('build', 'run'))
depends_on('py-numpy@1.5.1:', type=('build', 'run'))