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new package: phred (#10700)

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Part of the software collection introduced in #10529. Developers must
be contacted via email to receive the source code.
This commit is contained in:
Justin Stanley 2019-02-26 19:14:58 -06:00 committed by Peter Scheibel
parent fbdbed1180
commit cbecf9f555
1 changed files with 21 additions and 0 deletions
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var/spack/repos/builtin/packages/phred/package.py Normal file
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# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
import os
class Phred(MakefilePackage):
"""The phred software reads DNA sequencing trace files, calls bases,
and assigns a quality value to each called base."""
homepage = "http://www.phrap.org/phredphrapconsed.html"
url = "file://{0}/phred.tar.gz".format(os.getcwd())
version('071220', sha256='26212f13fa906c1ca0af61f48d52a5f2c1aacba802bf729ba65ca5222463abce')
def install(self, spec, prefix):
mkdirp(prefix.bin)
install('phred', prefix.bin)