Improve Ferret package (#17620)
* Ferret: Add missing dependency with curl. * Ferret: Don't force using the static version of libgfortran. * Ferret: Ensure Spack's compiler wrappers are used. This allows properly setting the rpaths. * Ferret: Add support for versions 7.3 to 7.6. * Ferret: Add a variant to install Ferret standard datasets. * Ferret: Define some useful runtime environnement variables. * Ferret: Fix flake8. Also add myself as a maintainer as suggested by @alalazo.
This commit is contained in:
Rémi Lacroix
GitHub
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58911d8248
commit
ccb316964d
@ -13,10 +13,18 @@ class Ferret(Package):
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designed to meet the needs of oceanographers and meteorologists
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analyzing large and complex gridded data sets."""
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homepage = "http://ferret.pmel.noaa.gov/Ferret/home"
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url = "ftp://ftp.pmel.noaa.gov/ferret/pub/source/fer_source.v696.tar.gz"
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url = "https://github.com/NOAA-PMEL/Ferret/archive/v7.6.0.tar.gz"
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version('7.2', sha256='21c339b1bafa6939fc869428d906451f130f7e77e828c532ab9488d51cf43095')
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version('6.96', sha256='7eb87156aa586cfe838ab83f08b2102598f9ab62062d540a5da8c9123816331a')
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maintainers = ['RemiLacroix-IDRIS']
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version('7.6.0', sha256='69832d740bd44c9eadd198a5de4d96c4c01ae90ae28c2c3414c1bb9f43e475d1')
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version('7.5.0', sha256='2a038c547e6e80e6bd0645a374c3247360cf8c94ea56f6f3444b533257eb16db')
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version('7.4', sha256='5167bb9e6ef441ae9cf90da555203d2155e3fcf929e7b8dddb237de0d58c5e5f')
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version('7.3', sha256='ae80a732c34156b5287a23696cf4ae4faf4de1dd705ff43cbb4168b05c6faaf4')
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version('7.2', sha256='21c339b1bafa6939fc869428d906451f130f7e77e828c532ab9488d51cf43095')
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version('6.96', sha256='7eb87156aa586cfe838ab83f08b2102598f9ab62062d540a5da8c9123816331a')
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variant('datasets', default=False, description="Install Ferret standard datasets")
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depends_on("hdf5+hl")
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depends_on("netcdf-c")
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@ -24,53 +32,128 @@ class Ferret(Package):
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depends_on("readline")
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depends_on("zlib")
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depends_on("libx11")
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depends_on("curl")
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# Make Java dependency optional with older versions of Ferret
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patch('https://github.com/NOAA-PMEL/Ferret/commit/c7eb70a0b17045c8ca7207d586bfea77a5340668.patch',
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sha256='5bd581db4578c013faed375844b206fbe71f93fe9ce60f8f9f41d64abc6a5972',
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level=1, working_dir='FERRET', when='@:6.99')
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resource(name='datasets',
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url='https://github.com/NOAA-PMEL/FerretDatasets/archive/v7.6.tar.gz',
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sha256='b2fef758ec1817c1c19e6225857ca3a82c727d209ed7fd4697d45c5533bb2c72',
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placement='fer_dsets', when='+datasets')
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def url_for_version(self, version):
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return "ftp://ftp.pmel.noaa.gov/ferret/pub/source/fer_source.v{0}.tar.gz".format(
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version.joined)
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if version <= Version('7.2'):
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return 'ftp://ftp.pmel.noaa.gov/ferret/pub/source/fer_source.v{0}.tar.gz'.format(
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version.joined)
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else:
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return 'https://github.com/NOAA-PMEL/Ferret/archive/v{0}.tar.gz'.format(version)
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def patch(self):
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hdf5_prefix = self.spec['hdf5'].prefix
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netcdff_prefix = self.spec['netcdf-fortran'].prefix
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readline_prefix = self.spec['readline'].prefix
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libz_prefix = self.spec['zlib'].prefix
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spec = self.spec
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hdf5_prefix = spec['hdf5'].prefix
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netcdff_prefix = spec['netcdf-fortran'].prefix
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readline_prefix = spec['readline'].prefix
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libz_prefix = spec['zlib'].prefix
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filter_file(r'^BUILDTYPE.+',
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'BUILDTYPE = x86_64-linux',
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'FERRET/site_specific.mk')
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filter_file(r'^INSTALL_FER_DIR.+',
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'INSTALL_FER_DIR = %s' % self.spec.prefix,
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'FERRET/site_specific.mk')
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filter_file(r'^HDF5_DIR.+',
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'HDF5_DIR = %s' % hdf5_prefix,
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'FERRET/site_specific.mk')
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filter_file(r'^NETCDF4_DIR.+',
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'NETCDF4_DIR = %s' % netcdff_prefix,
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'FERRET/site_specific.mk')
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filter_file(r'^READLINE_DIR.+',
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'READLINE_DIR = %s' % readline_prefix,
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'FERRET/site_specific.mk')
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filter_file(r'^LIBZ_DIR.+',
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'LIBZ_DIR = %s' % libz_prefix,
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'FERRET/site_specific.mk')
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filter_file(r'^JAVA_HOME.+',
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' ',
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'FERRET/site_specific.mk')
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filter_file(r'-lm',
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'-lgfortran -lm',
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'FERRET/platform_specific.mk.x86_64-linux')
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filter_file(r'\$\(NETCDF4_DIR\)/lib64/libnetcdff.a',
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"-L%s -lnetcdff" % self.spec['netcdf-fortran'].prefix.lib,
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'FERRET/platform_specific.mk.x86_64-linux')
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filter_file(r'\$\(NETCDF4_DIR\)/lib64/libnetcdf.a',
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"-L%s -lnetcdf" % self.spec['netcdf-c'].prefix.lib,
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'FERRET/platform_specific.mk.x86_64-linux')
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filter_file(r'\$\(HDF5_DIR\)/lib64/libhdf5_hl.a',
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"-L%s -lhdf5_hl" % self.spec['hdf5'].prefix.lib,
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'FERRET/platform_specific.mk.x86_64-linux')
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filter_file(r'\$\(HDF5_DIR\)/lib64/libhdf5.a',
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"-L%s -lhdf5" % self.spec['hdf5'].prefix.lib,
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'FERRET/platform_specific.mk.x86_64-linux')
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work_dir = 'FERRET' if '@:7.2' in spec else '.'
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with working_dir(work_dir, create=False):
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if '@7.3:' in spec:
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copy('site_specific.mk.in', 'site_specific.mk')
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copy('external_functions/ef_utility/site_specific.mk.in',
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'external_functions/ef_utility/site_specific.mk')
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filter_file(r'^DIR_PREFIX.+',
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'DIR_PREFIX = %s' % self.stage.source_path,
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'site_specific.mk')
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# Setting this to blank not to force
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# using the static version of readline
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filter_file(r'^(READLINE_(LIB)?DIR).+',
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'\\1 = ',
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'site_specific.mk')
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else:
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filter_file(r'^LIBZ_DIR.+',
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'LIBZ_DIR = %s' % libz_prefix,
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'site_specific.mk')
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filter_file(r'^JAVA_HOME.+',
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' ',
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'site_specific.mk')
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filter_file(r'^READLINE_DIR.+',
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'READLINE_DIR = %s' % readline_prefix,
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'site_specific.mk')
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filter_file(r'^BUILDTYPE.+',
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'BUILDTYPE = x86_64-linux',
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'site_specific.mk')
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filter_file(r'^INSTALL_FER_DIR.+',
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'INSTALL_FER_DIR = %s' % spec.prefix,
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'site_specific.mk')
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filter_file(r'^(HDF5_(LIB)?DIR).+',
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'\\1 = %s' % hdf5_prefix,
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'site_specific.mk')
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filter_file(r'^(NETCDF4?_(LIB)?DIR).+',
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'\\1 = %s' % netcdff_prefix,
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'site_specific.mk')
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if '@:7.3' in spec:
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# Don't force using the static version of libz
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filter_file(r'\$\(LIBZ_DIR\)/lib64/libz.a',
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'-lz',
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'platform_specific.mk.x86_64-linux')
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# Don't force using the static version of libgfortran
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filter_file(r'-Wl,-Bstatic -lgfortran -Wl,-Bdynamic',
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'-lgfortran',
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'platform_specific.mk.x86_64-linux')
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# This prevents the rpaths to be properly set
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# by Spack's compiler wrappers
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filter_file(r'-v --verbose',
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'',
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'platform_specific.mk.x86_64-linux')
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filter_file(r'^[ \t]*LD[ \t]*=.+',
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'LD = %s' % spack_cc,
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'platform_specific.mk.x86_64-linux')
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else:
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# Don't force using the static version of libgfortran
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filter_file(r'-static-libgfortran',
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'',
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'platform_specific.mk.x86_64-linux')
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if '@:7.4' in spec:
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compilers_spec_file = 'platform_specific.mk.x86_64-linux'
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else:
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compilers_spec_file = 'site_specific.mk'
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# Make sure Ferret uses Spack's compiler wrappers
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filter_file(r'^[ \t]*CC[ \t]*=.+',
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'CC = %s' % spack_cc,
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compilers_spec_file)
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filter_file(r'^[ \t]*CXX[ \t]*=.+',
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'CXX = %s' % spack_cxx,
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compilers_spec_file)
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filter_file(r'^[ \t]*FC[ \t]*=.+',
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'FC = %s' % spack_fc,
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compilers_spec_file)
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filter_file(r'^[ \t]*F77[ \t]*=.+',
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'F77 = %s' % spack_f77,
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compilers_spec_file)
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filter_file(r'\$\(NETCDF4?_(LIB)?DIR\).*/libnetcdff.a',
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"-L%s -lnetcdff" % spec['netcdf-fortran'].prefix.lib,
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'platform_specific.mk.x86_64-linux')
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filter_file(r'\$\(NETCDF4?_(LIB)?DIR\).*/libnetcdf.a',
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"-L%s -lnetcdf" % spec['netcdf-c'].prefix.lib,
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'platform_specific.mk.x86_64-linux')
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filter_file(r'\$\(HDF5_(LIB)?DIR\).*/libhdf5_hl.a',
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"-L%s -lhdf5_hl" % spec['hdf5'].prefix.lib,
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'platform_specific.mk.x86_64-linux')
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filter_file(r'\$\(HDF5_(LIB)?DIR\).*/libhdf5.a',
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"-L%s -lhdf5" % spec['hdf5'].prefix.lib,
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'platform_specific.mk.x86_64-linux')
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def install(self, spec, prefix):
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if 'LDFLAGS' in env and env['LDFLAGS']:
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@ -78,8 +161,37 @@ def install(self, spec, prefix):
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else:
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env['LDFLAGS'] = '-lquadmath'
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with working_dir('FERRET', create=False):
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work_dir = 'FERRET' if '@:7.2' in self.spec else '.'
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with working_dir(work_dir, create=False):
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os.environ['LD_X11'] = '-L%s -lX11' % spec['libx11'].prefix.lib
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os.environ['HOSTTYPE'] = 'x86_64-linux'
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make(parallel=False)
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make("install")
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if '+datasets' in self.spec:
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mkdir(self.prefix.fer_dsets)
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install_tree('fer_dsets', self.prefix.fer_dsets)
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def setup_run_environment(self, env):
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env.set('FER_DIR', self.prefix)
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env.set('FER_GO', ' '.join(['.', self.prefix.go, self.prefix.examples,
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self.prefix.contrib]))
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env.set('FER_EXTERNAL_FUNCTIONS', self.prefix.ext_func.libs)
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env.set('FER_PALETTE', ' '.join(['.', self.prefix.ppl]))
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env.set('FER_FONTS', self.prefix.ppl.fonts)
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fer_data = ['.']
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fer_descr = ['.']
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fer_grids = ['.']
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if '+datasets' in self.spec:
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env.set('FER_DSETS', self.prefix.fer_dsets)
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fer_data.append(self.prefix.fer_dsets.data)
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fer_descr.append(self.prefix.fer_dsets.descr)
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fer_grids.append(self.prefix.fer_dsets.grids)
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fer_data.extend([self.prefix.go, self.prefix.examples])
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env.set('FER_DATA', ' '.join(fer_data))
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env.set('FER_DESCR', ' '.join(fer_descr))
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env.set('FER_GRIDS', ' '.join(fer_grids))
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