revbayes: trying this again (#4861)
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var/spack/repos/builtin/packages/revbayes/package.py
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var/spack/repos/builtin/packages/revbayes/package.py
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##############################################################################
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# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/llnl/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class Revbayes(CMakePackage):
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"""Bayesian phylogenetic inference using probabilistic graphical models
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and an interpreted language."""
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homepage = "https://revbayes.github.io"
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url = "https://github.com/revbayes/revbayes/archive/v1.0.4-release.tar.gz"
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version('1.0.4', '5d6de96bcb3b2686b270856de3555a58')
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variant('mpi', default=True, description='Enable MPI parallel support')
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depends_on('boost')
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depends_on('mpi', when='+mpi')
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conflicts('%gcc@7.1.0:')
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root_cmakelists_dir = 'projects/cmake/build'
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@run_before('cmake')
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def regenerate(self):
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with working_dir(join_path('projects', 'cmake')):
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mkdirp('build')
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edit = FileFilter('regenerate.sh')
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edit.filter('boost="true"', 'boost="false"')
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if '+mpi' in self.spec:
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edit.filter('mpi="false"', 'mpi="true"')
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regenerate = Executable('./regenerate.sh')
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regenerate()
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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if '+mpi' in spec:
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install('rb-mpi', prefix.bin)
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else:
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install('rb', prefix.bin)
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