Spack Bioconductor package updates (#33852)
* add version 1.46.0 to bioconductor package r-a4 * add version 1.46.0 to bioconductor package r-a4base * add version 1.46.0 to bioconductor package r-a4classif * add version 1.46.0 to bioconductor package r-a4core * add version 1.46.0 to bioconductor package r-a4preproc * add version 1.46.0 to bioconductor package r-a4reporting * add version 1.52.0 to bioconductor package r-absseq * add version 1.28.0 to bioconductor package r-acde * add version 1.76.0 to bioconductor package r-acgh * add version 2.54.0 to bioconductor package r-acme * add version 1.68.0 to bioconductor package r-adsplit * add version 1.70.0 to bioconductor package r-affxparser * add version 1.76.0 to bioconductor package r-affy * add version 1.74.0 to bioconductor package r-affycomp * add version 1.58.0 to bioconductor package r-affycompatible * add version 1.56.0 to bioconductor package r-affycontam * add version 1.70.0 to bioconductor package r-affycoretools * add version 1.46.0 to bioconductor package r-affydata * add version 1.50.0 to bioconductor package r-affyilm * add version 1.68.0 to bioconductor package r-affyio * add version 1.74.0 to bioconductor package r-affyplm * add version 1.44.0 to bioconductor package r-affyrnadegradation * add version 1.46.0 to bioconductor package r-agdex * add version 3.30.0 to bioconductor package r-agilp * add version 2.48.0 to bioconductor package r-agimicrorna * add version 1.30.0 to bioconductor package r-aims * add version 1.30.0 to bioconductor package r-aldex2 * add version 1.36.0 to bioconductor package r-allelicimbalance * add version 1.24.0 to bioconductor package r-alpine * add version 2.60.0 to bioconductor package r-altcdfenvs * add version 2.22.0 to bioconductor package r-anaquin * add version 1.26.0 to bioconductor package r-aneufinder * add version 1.26.0 to bioconductor package r-aneufinderdata * add version 1.70.0 to bioconductor package r-annaffy * add version 1.76.0 to bioconductor package r-annotate * add version 1.60.0 to bioconductor package r-annotationdbi * add version 1.22.0 to bioconductor package r-annotationfilter * add version 1.40.0 to bioconductor package r-annotationforge * add version 3.6.0 to bioconductor package r-annotationhub * add version 3.28.0 to bioconductor package r-aroma-light * add version 1.30.0 to bioconductor package r-bamsignals * add version 2.14.0 to bioconductor package r-beachmat * add version 2.58.0 to bioconductor package r-biobase * add version 2.6.0 to bioconductor package r-biocfilecache * add version 0.44.0 to bioconductor package r-biocgenerics * add version 1.8.0 to bioconductor package r-biocio * add version 1.16.0 to bioconductor package r-biocneighbors * add version 1.32.1 to bioconductor package r-biocparallel * add version 1.14.0 to bioconductor package r-biocsingular * add version 2.26.0 to bioconductor package r-biocstyle * add version 3.16.0 to bioconductor package r-biocversion * add version 2.54.0 to bioconductor package r-biomart * add version 1.26.0 to bioconductor package r-biomformat * add version 2.66.0 to bioconductor package r-biostrings * add version 1.46.0 to bioconductor package r-biovizbase * add version 1.8.0 to bioconductor package r-bluster * add version 1.66.1 to bioconductor package r-bsgenome * add version 1.34.0 to bioconductor package r-bsseq * add version 1.40.0 to bioconductor package r-bumphunter * add version 2.64.0 to bioconductor package r-category * add version 2.28.0 to bioconductor package r-champ * add version 2.30.0 to bioconductor package r-champdata * add version 1.48.0 to bioconductor package r-chipseq * add version 4.6.0 to bioconductor package r-clusterprofiler * add version 1.34.0 to bioconductor package r-cner * add version 1.30.0 to bioconductor package r-codex * add version 2.14.0 to bioconductor package r-complexheatmap * add version 1.72.0 to bioconductor package r-ctc * add version 2.26.0 to bioconductor package r-decipher * add version 0.24.0 to bioconductor package r-delayedarray * add version 1.20.0 to bioconductor package r-delayedmatrixstats * add version 1.38.0 to bioconductor package r-deseq2 * add version 1.44.0 to bioconductor package r-dexseq * add version 1.40.0 to bioconductor package r-dirichletmultinomial * add version 2.12.0 to bioconductor package r-dmrcate * add version 1.72.0 to bioconductor package r-dnacopy * add version 3.24.1 to bioconductor package r-dose * add version 2.46.0 to bioconductor package r-dss * add version 3.40.0 to bioconductor package r-edger * add version 1.18.0 to bioconductor package r-enrichplot * add version 2.22.0 to bioconductor package r-ensembldb * add version 1.44.0 to bioconductor package r-exomecopy * add version 2.6.0 to bioconductor package r-experimenthub * add version 1.24.0 to bioconductor package r-fgsea * add version 2.70.0 to bioconductor package r-gcrma * add version 1.34.0 to bioconductor package r-gdsfmt * add version 1.80.0 to bioconductor package r-genefilter * add version 1.34.0 to bioconductor package r-genelendatabase * add version 1.70.0 to bioconductor package r-genemeta * add version 1.76.0 to bioconductor package r-geneplotter * add version 1.20.0 to bioconductor package r-genie3 * add version 1.34.3 to bioconductor package r-genomeinfodb * update r-genomeinfodbdata * add version 1.34.0 to bioconductor package r-genomicalignments * add version 1.50.2 to bioconductor package r-genomicfeatures * add version 1.50.1 to bioconductor package r-genomicranges * add version 2.66.0 to bioconductor package r-geoquery * add version 1.46.0 to bioconductor package r-ggbio * add version 3.6.2 to bioconductor package r-ggtree * add version 2.8.0 to bioconductor package r-glimma * add version 1.10.0 to bioconductor package r-glmgampoi * add version 5.52.0 to bioconductor package r-globaltest * update r-go-db * add version 1.18.0 to bioconductor package r-gofuncr * add version 2.24.0 to bioconductor package r-gosemsim * add version 1.50.0 to bioconductor package r-goseq * add version 2.64.0 to bioconductor package r-gostats * add version 1.76.0 to bioconductor package r-graph * add version 1.60.0 to bioconductor package r-gseabase * add version 1.30.0 to bioconductor package r-gtrellis * add version 1.42.0 to bioconductor package r-gviz * add version 1.26.0 to bioconductor package r-hdf5array * add version 1.70.0 to bioconductor package r-hypergraph * add version 1.34.0 to bioconductor package r-illumina450probevariants-db * add version 0.40.0 to bioconductor package r-illuminaio * add version 1.72.0 to bioconductor package r-impute * add version 1.36.0 to bioconductor package r-interactivedisplaybase * add version 2.32.0 to bioconductor package r-iranges * add version 1.58.0 to bioconductor package r-kegggraph * add version 1.38.0 to bioconductor package r-keggrest * add version 3.54.0 to bioconductor package r-limma * add version 2.50.0 to bioconductor package r-lumi * add version 1.74.0 to bioconductor package r-makecdfenv * add version 1.76.0 to bioconductor package r-marray * add version 1.10.0 to bioconductor package r-matrixgenerics * add version 1.6.0 to bioconductor package r-metapod * add version 2.44.0 to bioconductor package r-methylumi * add version 1.44.0 to bioconductor package r-minfi * add version 1.32.0 to bioconductor package r-missmethyl * add version 1.78.0 to bioconductor package r-mlinterfaces * add version 1.10.0 to bioconductor package r-mscoreutils * add version 2.24.0 to bioconductor package r-msnbase * add version 2.54.0 to bioconductor package r-multtest * add version 1.36.0 to bioconductor package r-mzid * add version 2.32.0 to bioconductor package r-mzr * add version 1.60.0 to bioconductor package r-oligoclasses * update r-org-hs-eg-db * add version 1.40.0 to bioconductor package r-organismdbi * add version 1.38.0 to bioconductor package r-pathview * add version 1.90.0 to bioconductor package r-pcamethods * update r-pfam-db * add version 1.42.0 to bioconductor package r-phyloseq * add version 1.60.0 to bioconductor package r-preprocesscore * add version 1.30.0 to bioconductor package r-protgenerics * add version 1.32.0 to bioconductor package r-quantro * add version 2.30.0 to bioconductor package r-qvalue * add version 1.74.0 to bioconductor package r-rbgl * add version 2.38.0 to bioconductor package r-reportingtools * add version 2.42.0 to bioconductor package r-rgraphviz * add version 2.42.0 to bioconductor package r-rhdf5 * add version 1.10.0 to bioconductor package r-rhdf5filters * add version 1.20.0 to bioconductor package r-rhdf5lib * add version 2.0.0 to bioconductor package r-rhtslib * add version 1.74.0 to bioconductor package r-roc * add version 1.26.0 to bioconductor package r-rots * add version 2.14.0 to bioconductor package r-rsamtools * add version 1.58.0 to bioconductor package r-rtracklayer * add version 0.36.0 to bioconductor package r-s4vectors * add version 1.6.0 to bioconductor package r-scaledmatrix * add version 1.26.0 to bioconductor package r-scater * add version 1.12.0 to bioconductor package r-scdblfinder * add version 1.26.0 to bioconductor package r-scran * add version 1.8.0 to bioconductor package r-scuttle * add version 1.64.0 to bioconductor package r-seqlogo * add version 1.56.0 to bioconductor package r-shortread * add version 1.72.0 to bioconductor package r-siggenes * add version 1.20.0 to bioconductor package r-singlecellexperiment * add version 1.32.0 to bioconductor package r-snprelate * add version 1.48.0 to bioconductor package r-snpstats * add version 2.34.0 to bioconductor package r-somaticsignatures * add version 1.10.0 to bioconductor package r-sparsematrixstats * add version 1.38.0 to bioconductor package r-spem * add version 1.36.0 to bioconductor package r-sseq * add version 1.28.0 to bioconductor package r-summarizedexperiment * add version 3.46.0 to bioconductor package r-sva * add version 1.36.0 to bioconductor package r-tfbstools * add version 1.20.0 to bioconductor package r-tmixclust * add version 2.50.0 to bioconductor package r-topgo * add version 1.22.0 to bioconductor package r-treeio * add version 1.26.0 to bioconductor package r-tximport * add version 1.26.0 to bioconductor package r-tximportdata * add version 1.44.0 to bioconductor package r-variantannotation * add version 3.66.0 to bioconductor package r-vsn * add version 2.4.0 to bioconductor package r-watermelon * add version 2.44.0 to bioconductor package r-xde * add version 1.56.0 to bioconductor package r-xmapbridge * add version 0.38.0 to bioconductor package r-xvector * add version 1.24.0 to bioconductor package r-yapsa * add version 1.24.0 to bioconductor package r-yarn * add version 1.44.0 to bioconductor package r-zlibbioc * make version resource consistent for r-bsgenome-hsapiens-ucsc-hg19 * make version resource consistent for r-go-db * make version resource consistent for r-kegg-db * make version resource consistent for r-org-hs-eg-db * make version resource consistent for r-pfam-db * new package: r-ggrastr * Patches not needed for new version * new package: r-hdo-db * new package: r-ggnewscale * new package: r-gson * Actually depends on ggplot2@3.4.0: * Fix formatting of r-hdo-db * Fix dependency version specifiers * Clean up duplicate dependency references
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@ -14,6 +14,7 @@ class RA4(RPackage):
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bioc = "a4"
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version("1.46.0", commit="1b8f1300025fb0940e7f24cff7ffec9fca02d0e4")
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version("1.44.0", commit="5b0fc5a9971d8f3688ad1f88a4f5ee1498e91633")
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version("1.42.0", commit="fc26809e2bce7cd50d99d6f6dd5f85c38342fdea")
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version("1.38.0", commit="5b7a9087bab10c55e24707e96e48046995236c94")
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@ -14,6 +14,7 @@ class RA4base(RPackage):
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bioc = "a4Base"
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version("1.46.0", commit="be70ae723bb6031cdf9540d62dc6113761074e88")
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version("1.44.0", commit="9ae69e03118c7b14df0e6c9e3b25362b09f25bbe")
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version("1.42.0", commit="d7296e2792020e9c5b1c19101104326ee8bebfe6")
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version("1.38.0", commit="4add242fa9c62795aca5b0dfca34a43484c5aa82")
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@ -15,6 +15,7 @@ class RA4classif(RPackage):
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bioc = "a4Classif"
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version("1.46.0", commit="96794183a76ab7da7a1863ccd421640254447af5")
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version("1.44.0", commit="df0fce781f9bc480a1159d958c9a63c314a9ed01")
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version("1.42.0", commit="820854a7ca9ed0c295479a25b7e3375c6d01d0b5")
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version("1.38.0", commit="c4d058813efb835774813b2d69c52912162f8e75")
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@ -14,6 +14,7 @@ class RA4core(RPackage):
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bioc = "a4Core"
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version("1.46.0", commit="8999fe146be6d04ae36c725d2b6324a6ce8ceb83")
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version("1.44.0", commit="61a7f3a51a41af615bfd4c22984e4c4a82874e8c")
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version("1.42.0", commit="6985950b72c2a0f20ec44fe2067d8864e004bfaa")
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version("1.38.0", commit="a027dcd3486c64950815ec7c7271f1f65ba3d8a1")
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@ -14,6 +14,7 @@ class RA4preproc(RPackage):
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bioc = "a4Preproc"
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version("1.46.0", commit="8463958692c73fd655a6dfec39ea99c915513719")
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version("1.44.0", commit="252381265b96b83803a93e0c2014dd6b0574e57f")
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version("1.42.0", commit="773a91e884d2ada16fe9cf57d5ed53c0155e3fa2")
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version("1.38.0", commit="c93c223bd531bff090531a109b51f8dcd710d0cb")
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@ -14,6 +14,7 @@ class RA4reporting(RPackage):
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bioc = "a4Reporting"
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version("1.46.0", commit="00b82d25bef4d518ae92f615d3a6f7931c0618dc")
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version("1.44.0", commit="bfe83507daf53e2e327474ea3012f0dc920efac1")
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version("1.42.0", commit="b0d715b9cdac80bc412f0a9a6b33941c4a7582bb")
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version("1.38.0", commit="cd3cf244e7a299b2485684ed15519cbbda1c590f")
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@ -17,6 +17,7 @@ class RAbsseq(RPackage):
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bioc = "ABSSeq"
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version("1.52.0", commit="07038c047775e17d5d29909927d2143efb63e9cb")
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version("1.50.0", commit="4f384d04ebaae6ea0b56e5cff9a9dcdcb6c8afb0")
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version("1.48.0", commit="b237c967d44d075ca306c35e92df8b66a60ce72d")
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version("1.44.0", commit="c202b4a059021ed1228ccee7303c69b0aa4ca1ee")
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@ -22,6 +22,7 @@ class RAcde(RPackage):
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bioc = "acde"
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version("1.28.0", commit="0edccca7be2475fa2ae3b3c36d0d64924c37b3c0")
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version("1.26.0", commit="dfef9a435062e948efd5eda22942a0d500baa992")
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version("1.24.0", commit="0c3c4d47af7eaff37420032ea5245743a65124cf")
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version("1.20.0", commit="cefb4f2e2b0ef3c5f51944c0ece7a71294020350")
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@ -16,6 +16,7 @@ class RAcgh(RPackage):
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bioc = "aCGH"
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version("1.76.0", commit="c6068522854ed0b1c3feb006619ef25590f70ad6")
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version("1.74.0", commit="e7ba380af0da138788eb6c86f5dbe453269c0810")
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version("1.72.0", commit="b5d4022ac487125194d3913f1b8c2948db6e2792")
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version("1.68.0", commit="91f41a3917ddce43eb05e11c90eb99c467ba2247")
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@ -21,6 +21,7 @@ class RAcme(RPackage):
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bioc = "ACME"
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version("2.54.0", commit="8d39d9d6623adf427f5eba308790e1de01213870")
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version("2.52.0", commit="14a97c722d0201654af9e583e7e462b458c28a77")
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version("2.50.0", commit="d55a19a8c091e8ea5fd35041520107a7f7603e14")
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version("2.46.0", commit="68f45c9f7d34c28adf6a0fc4245fdf63881109de")
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@ -16,6 +16,7 @@ class RAdsplit(RPackage):
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bioc = "adSplit"
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version("1.68.0", commit="705977b5e1cb7dd69793cc673fa215baaba42af5")
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version("1.66.0", commit="64580a6f7a9bc6b16334267c90df48fbb839cc16")
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version("1.64.0", commit="32f150eb51c66b867301dceeb527de5b97f9f490")
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version("1.60.0", commit="de5abccfe652cbc5b5f49fb6ed77cdd15cc760cd")
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@ -20,6 +20,7 @@ class RAffxparser(RPackage):
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bioc = "affxparser"
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version("1.70.0", commit="28f94cd3477e9500942be89cbcb5cad1bbb369fe")
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version("1.68.1", commit="821a01a2df18115a3b7864b3f45418255b7123eb")
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version("1.66.0", commit="2ea72d4c924ac14bdd807b23563c8501c226ce3a")
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version("1.62.0", commit="b3e988e5c136c3f1a064e1da13730b403c8704c0")
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@ -15,6 +15,7 @@ class RAffy(RPackage):
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bioc = "affy"
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version("1.76.0", commit="3bb309388d5d6402c356d4a5270ee83c5b88942f")
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version("1.74.0", commit="2266c4a46eda7e5b64f7f3e17e8b61e7b85579ff")
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version("1.72.0", commit="3750b4eb8e5224b19100f6c881b67e568d8968a2")
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version("1.68.0", commit="1664399610c9aa519399445a2ef8bb9ea2233eac")
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@ -14,6 +14,7 @@ class RAffycomp(RPackage):
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bioc = "affycomp"
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version("1.74.0", commit="1160d6395f23085456938ba2bd38fb45597fc92f")
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version("1.72.0", commit="c52baea98b80abd4a99380ac9d4b68ef91869d40")
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version("1.70.0", commit="487f6775975092475581a6c02ddb27590559cf07")
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version("1.66.0", commit="388d01af8b1e6ab11051407f77d0206512df8424")
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@ -18,6 +18,7 @@ class RAffycompatible(RPackage):
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bioc = "AffyCompatible"
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version("1.58.0", commit="6508e72736371d353ec5f02d30caf8ffe39b342a")
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version("1.56.0", commit="37ea4bb885c791fb989f40092f3d0d2c57d35641")
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version("1.54.0", commit="fde7d86ccdb03c13c4838c18ac25477ffe6e0fe5")
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version("1.50.0", commit="3b12d12bd6d1a9f0d45e012817231d137d47089e")
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@ -14,6 +14,7 @@ class RAffycontam(RPackage):
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bioc = "affyContam"
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version("1.56.0", commit="e2b8a4fba1648255eadce954a848f2dd8e22bcb3")
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version("1.54.0", commit="c5208b48b8881983ff53a4713244327e8ad13b78")
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version("1.52.0", commit="47c1d86da330f157d3ece0e26b0657d66a5ca0c9")
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version("1.48.0", commit="88387a2ad4be4234d36710c65f2ca3a5b06b67da")
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@ -15,6 +15,7 @@ class RAffycoretools(RPackage):
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bioc = "affycoretools"
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version("1.70.0", commit="f09a788aa83e1e052a7c5f148a451a99fe9c9c96")
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version("1.68.1", commit="69546b1fe5edd71eca130d53d33f0fb0fcf62c97")
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version("1.66.0", commit="6bf769d70e196634097f465ed2fa85cce5312a6d")
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version("1.62.0", commit="c9779e4da648fd174c9bd575c6020be1c03047c4")
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@ -15,6 +15,7 @@ class RAffydata(RPackage):
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bioc = "affydata"
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version("1.46.0", commit="870745b886df9f1fbbd6130d266c0ef96f3afa66")
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version("1.44.0", commit="f18304a356cee8cd7297bab362b13c40e50439df")
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version("1.42.0", commit="4b54c1206bedd27ff9be32affc999a279f4e96f0")
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version("1.38.0", commit="b5e843b2514789d0d87bea44d762c89a95314ee7")
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@ -16,6 +16,7 @@ class RAffyilm(RPackage):
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bioc = "affyILM"
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version("1.50.0", commit="185cd8e4712a3378ce7a156d4940224bbb2c4122")
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version("1.48.0", commit="4603a4c4d6c2330a8a56a7bb657dc56c51a9393a")
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version("1.46.0", commit="67ffbfa6c881ed83d15604bf4463fe5dba81036b")
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version("1.42.0", commit="b97b29786b866de38802ebbb995169be91e90942")
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@ -15,6 +15,7 @@ class RAffyio(RPackage):
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bioc = "affyio"
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version("1.68.0", commit="33080c5eeb14c0ca40f0d231706af4e0c2c1ef8b")
|
||||
version("1.66.0", commit="3a0b90704fc46cddd99a72b985a6bdb348f69b50")
|
||||
version("1.64.0", commit="aa7ce48f3f4110431f6f488d45961fde4019ffb0")
|
||||
version("1.60.0", commit="ee20528b32700e99768da48143d6d45c9a7bbe91")
|
||||
|
@ -17,6 +17,7 @@ class RAffyplm(RPackage):
|
||||
|
||||
bioc = "affyPLM"
|
||||
|
||||
version("1.74.0", commit="5f76ef92e69deabc19c5395eaec4adb85c66b63d")
|
||||
version("1.72.0", commit="394c0a8e213f188d0b1d01e20516df8bf1bc5c09")
|
||||
version("1.70.0", commit="64abfec92b347aa340b54a8c7b2fbd524fe9c312")
|
||||
version("1.66.0", commit="f0780c3d0e9dccaff83861b98beb5c1d324c4399")
|
||||
|
@ -18,6 +18,7 @@ class RAffyrnadegradation(RPackage):
|
||||
|
||||
bioc = "AffyRNADegradation"
|
||||
|
||||
version("1.44.0", commit="63881f41fc67cc7322b189446dcffb4e1060e303")
|
||||
version("1.42.0", commit="5775f41f538b3c8ee4d07d38cec1b49c548cebe6")
|
||||
version("1.40.0", commit="8539a91ee464d692a267bb17c91dc1ef9a231f41")
|
||||
version("1.36.0", commit="89662b93076659db2967a526899184c12c156bc5")
|
||||
|
@ -14,6 +14,7 @@ class RAgdex(RPackage):
|
||||
|
||||
bioc = "AGDEX"
|
||||
|
||||
version("1.46.0", commit="d7c38e8bdcaa7b0261117c605e7f61e2b07e8316")
|
||||
version("1.44.0", commit="9d3eb90eaf7bf093c7fa73facb3df89506a85185")
|
||||
version("1.42.0", commit="175cf1b384b0942103d841b1feb9e4f7d141ba06")
|
||||
version("1.38.0", commit="7e2c1f5f27ccbea6a7157f5122212e40408b74da")
|
||||
|
@ -13,6 +13,7 @@ class RAgilp(RPackage):
|
||||
|
||||
bioc = "agilp"
|
||||
|
||||
version("3.30.0", commit="a2c898dc901ccdda4b8582caff079ab20b1bfc28")
|
||||
version("3.28.0", commit="2c6dfccc76473b5bef13b75fa59adf46b3381f55")
|
||||
version("3.26.0", commit="3170fe2b1cc459d5e2ca7f61a127aac17cd66a96")
|
||||
version("3.22.0", commit="7d089d576752e0526f15a1007e94436089954313")
|
||||
|
@ -14,6 +14,7 @@ class RAgimicrorna(RPackage):
|
||||
|
||||
bioc = "AgiMicroRna"
|
||||
|
||||
version("2.48.0", commit="4c163b1b730150a3a60a3815bd8c08fa04d71fc1")
|
||||
version("2.46.0", commit="8c6d73e1c3f1f9cc019bdb219b19e6179bb1efe4")
|
||||
version("2.44.0", commit="8b308baa3b1b0afc0855ea263630a288689e3864")
|
||||
version("2.40.0", commit="cfa4acb2215da44767ab3a45845bcd587c309e74")
|
||||
|
@ -17,6 +17,7 @@ class RAims(RPackage):
|
||||
|
||||
bioc = "AIMS"
|
||||
|
||||
version("1.30.0", commit="2ab61159c5aa0902cc33fc1502f7853b66912cce")
|
||||
version("1.28.0", commit="84608df638b5694c08158ed77ad2c8a64c4e594b")
|
||||
version("1.26.0", commit="5dcf60eb4cdcf563ea848482c9c488f465c27bbd")
|
||||
version("1.22.0", commit="34a38978b24377abb864eff7683bb36344ff171d")
|
||||
|
@ -23,6 +23,7 @@ class RAldex2(RPackage):
|
||||
|
||||
bioc = "ALDEx2"
|
||||
|
||||
version("1.30.0", commit="cb6670515a8722f9cfedac12a8c2747a5298ee46")
|
||||
version("1.28.1", commit="f8d8ba6d2439bff75ab80f5466c9a047c31ed0a6")
|
||||
version("1.26.0", commit="0876a2eac08d3f1c01df7414d97d391c80182ada")
|
||||
version("1.22.0", commit="ac7f0ab3f094ec52713da7620a27058b14c7181d")
|
||||
|
@ -14,6 +14,7 @@ class RAllelicimbalance(RPackage):
|
||||
|
||||
bioc = "AllelicImbalance"
|
||||
|
||||
version("1.36.0", commit="cb4910c1fd58cc4272c21251a8f120990e1aa431")
|
||||
version("1.34.0", commit="290708ccc4ceae1fbb9e9257cb254916449d389b")
|
||||
version("1.32.0", commit="428ab8c96bb15fab45e4084da25f98b01b9d60b6")
|
||||
version("1.28.0", commit="ac5d13c9ee0935bf9500ee542792644e752a1fde")
|
||||
|
@ -14,6 +14,7 @@ class RAlpine(RPackage):
|
||||
|
||||
bioc = "alpine"
|
||||
|
||||
version("1.24.0", commit="7e734d49881761cafaacea096ce757531b6bd522")
|
||||
version("1.22.0", commit="6107a82962f07e0434e93f261cd375eaaa171d91")
|
||||
version("1.20.0", commit="9348ef14128aa6be10cca1987736ddbc385df7e9")
|
||||
version("1.16.0", commit="aee397774ac6cd17ad45dc05be14c526647f3c13")
|
||||
|
@ -13,6 +13,7 @@ class RAltcdfenvs(RPackage):
|
||||
|
||||
bioc = "altcdfenvs"
|
||||
|
||||
version("2.60.0", commit="0bc0b4493b8e9fe2eb47fb8e9377123ce8f472bb")
|
||||
version("2.58.0", commit="08255a777ffa1e1414d3dd3062d95bfdd3dfd47c")
|
||||
version("2.56.0", commit="941e00b97a33662a8230991e387070324b2e76bf")
|
||||
version("2.52.0", commit="21329abf82eae26f84b7c0270e81c8e089c548ce")
|
||||
|
@ -17,6 +17,7 @@ class RAnaquin(RPackage):
|
||||
|
||||
bioc = "Anaquin"
|
||||
|
||||
version("2.22.0", commit="d848a9bd7bf9d1d62202cc477300bf1a65b3e36c")
|
||||
version("2.20.0", commit="61598dd3430b09b57f31d7d550ea95126a2d73c8")
|
||||
version("2.18.0", commit="c8e3df3e299c32daac0dda23cea59a18673d886b")
|
||||
version("2.14.0", commit="d0a34c931a0e72080bff91dacb37dbbe26b45386")
|
||||
|
@ -15,6 +15,7 @@ class RAneufinder(RPackage):
|
||||
|
||||
bioc = "AneuFinder"
|
||||
|
||||
version("1.26.0", commit="7cd59a1e24c6512f2e4fcbe2c53a0d3cd2d06217")
|
||||
version("1.24.0", commit="4c6906eee514eba3e8ac159654a6953e37a99bba")
|
||||
version("1.22.0", commit="ea0beb3d827c2dd4bc56708a839a93c55304918b")
|
||||
version("1.18.0", commit="76ec9af947f97212084ca478e8e82f9e0eb79de9")
|
||||
|
@ -14,6 +14,7 @@ class RAneufinderdata(RPackage):
|
||||
|
||||
bioc = "AneuFinderData"
|
||||
|
||||
version("1.26.0", commit="4b810599b62a3fb39239bfd98ed960c93989e86b")
|
||||
version("1.24.0", commit="cf6f3852702aab28e3170fc56b695d00b7389666")
|
||||
version("1.22.0", commit="ae8eec3b0afdc351dc447aad2024df5b2c75e56b")
|
||||
version("1.18.0", commit="1bf1657b28fc8c1425e611980a692da952ce3d1e")
|
||||
|
@ -16,6 +16,7 @@ class RAnnaffy(RPackage):
|
||||
|
||||
bioc = "annaffy"
|
||||
|
||||
version("1.70.0", commit="c99e81259adb39b5d8e954fd7afe7f93675229bc")
|
||||
version("1.68.0", commit="fa930c0bbdca9828a130ab06d86c65d451380830")
|
||||
version("1.66.0", commit="aa1afa1509754128d27508228c1f39f51a8da043")
|
||||
version("1.62.0", commit="ad9c37e0e7e45e0f35c208ce528ba48000b37432")
|
||||
|
@ -13,6 +13,7 @@ class RAnnotate(RPackage):
|
||||
|
||||
bioc = "annotate"
|
||||
|
||||
version("1.76.0", commit="0181d5c41d594e36be06adb6a02302db0ad2c507")
|
||||
version("1.74.0", commit="200c71743417792880f8171d59b2ac0ddd3902a8")
|
||||
version("1.72.0", commit="67ac76a9ff6d60dc1620763d3aa98aef39443110")
|
||||
version("1.68.0", commit="98cdb12c612b3f3fc06329a89a1ffb0a92b555c0")
|
||||
|
@ -14,6 +14,7 @@ class RAnnotationdbi(RPackage):
|
||||
|
||||
bioc = "AnnotationDbi"
|
||||
|
||||
version("1.60.0", commit="cd61bd1b1538e2f1f411fd7087820749ecf39da8")
|
||||
version("1.58.0", commit="05fcf7a28a6b15b195da23474d7ba89bd0cfd891")
|
||||
version("1.56.2", commit="13fdc4a93852199ca6ec120a2fe1078f9f445f67")
|
||||
version("1.52.0", commit="c4e0ca9bd65362ae9cad6a98d90f54267b0ae838")
|
||||
|
@ -15,6 +15,7 @@ class RAnnotationfilter(RPackage):
|
||||
|
||||
bioc = "AnnotationFilter"
|
||||
|
||||
version("1.22.0", commit="c9fea4a829ce9419b6e0af987915b2d469358597")
|
||||
version("1.20.0", commit="2818aff6502fd6fe819521cd8d97695ef6f9198e")
|
||||
version("1.18.0", commit="60a9b666d7362d7ed5c357fd4a5d2744d8598c20")
|
||||
version("1.14.0", commit="6ee3a13ed93a535ed452cbc8c118151a2cbb732c")
|
||||
|
@ -14,6 +14,7 @@ class RAnnotationforge(RPackage):
|
||||
|
||||
bioc = "AnnotationForge"
|
||||
|
||||
version("1.40.0", commit="f77d3a942eb6b18c18888b7af3f0e652596cf19f")
|
||||
version("1.38.1", commit="2dcedf353bc57bf80818e6adb1f7129c21886f6b")
|
||||
version("1.38.0", commit="1f77750562ea3a01f0f1a46c299184fc31196ffd")
|
||||
version("1.36.0", commit="523b5f0c3ffb77e59e1568e5f36a5a470bfeeae5")
|
||||
|
@ -20,6 +20,7 @@ class RAnnotationhub(RPackage):
|
||||
|
||||
bioc = "AnnotationHub"
|
||||
|
||||
version("3.6.0", commit="3315a73b7803a92412ed18209dd37b378195b86f")
|
||||
version("3.4.0", commit="e74e54ca44f50c2c15c60f8620e3d1721f8f5b6d")
|
||||
version("3.2.1", commit="ad1dfe86f0b0ea4711cc9cdb89e073e8794ec9aa")
|
||||
version("2.22.0", commit="3ab7dceebbc31ac14ca931f66c662cf9538b7d0a")
|
||||
|
@ -16,6 +16,7 @@ class RAromaLight(RPackage):
|
||||
|
||||
bioc = "aroma.light"
|
||||
|
||||
version("3.28.0", commit="7749dd7033e9885ec2546a5cac0562bac2fea04d")
|
||||
version("3.26.0", commit="7ead7517a77bc8b4b4b42aace69957a17e8fe016")
|
||||
version("3.24.0", commit="3ff48b8f546acc9803b3c652363cac78d3b81ae5")
|
||||
version("3.20.0", commit="02cde7fa166259bce73c396a87dca2ecc8249c39")
|
||||
|
@ -16,6 +16,7 @@ class RBamsignals(RPackage):
|
||||
|
||||
bioc = "bamsignals"
|
||||
|
||||
version("1.30.0", commit="aac37dffd6f6876b4626866e3d40bb7af75620fe")
|
||||
version("1.28.0", commit="27b70be6f73747d9d32054da043f4a37ea55b917")
|
||||
version("1.26.0", commit="d57643441d04f77db0907637dc9e7cd5bed5842f")
|
||||
version("1.22.0", commit="5f533969c84212406bcb3ebf725ebb6d77e9947a")
|
||||
|
@ -17,6 +17,7 @@ class RBeachmat(RPackage):
|
||||
|
||||
bioc = "beachmat"
|
||||
|
||||
version("2.14.0", commit="5a4b85f4a22f3447f12d03157ab95de73f6137c6")
|
||||
version("2.12.0", commit="3e6af145bdcdf0a0b722d8256ba1a38b8a36b2f5")
|
||||
version("2.10.0", commit="b7cc532d4a5b26d9073135cc9945258ea08e5079")
|
||||
version("2.6.4", commit="7d9dc6379017d723dda3e8dc9fd1f6de7fd33cdb")
|
||||
|
@ -14,6 +14,7 @@ class RBiobase(RPackage):
|
||||
|
||||
bioc = "Biobase"
|
||||
|
||||
version("2.58.0", commit="767f2f33f158f233616178e12ce08cdb03d2a5a2")
|
||||
version("2.56.0", commit="3b2dd91b333677c2f27257c7624014a55e73c52b")
|
||||
version("2.54.0", commit="8215d76ce44899e6d10fe8a2f503821a94ef6b40")
|
||||
version("2.50.0", commit="9927f90d0676382f2f99e099d8d2c8e2e6f1b4de")
|
||||
|
@ -16,6 +16,7 @@ class RBiocfilecache(RPackage):
|
||||
|
||||
bioc = "BiocFileCache"
|
||||
|
||||
version("2.6.0", commit="f5b8368c1402b15e8db8eab59217f1176e902e6f")
|
||||
version("2.4.0", commit="2c00eee40d95fddad223f115f959b09e1a14f75d")
|
||||
version("2.2.1", commit="cc912123408803193bf37395f4d18baa8dcd6f47")
|
||||
version("1.14.0", commit="cdcde4b59ae73dda12aa225948dbd0a058d9be6d")
|
||||
|
@ -13,6 +13,7 @@ class RBiocgenerics(RPackage):
|
||||
|
||||
bioc = "BiocGenerics"
|
||||
|
||||
version("0.44.0", commit="d7cd9c19958bd8d4573d980494188fa15ab16e45")
|
||||
version("0.42.0", commit="3582d47b836387afc08157f3d6a5013fd64334ed")
|
||||
version("0.40.0", commit="0bc1e0ed4d20c7101cd782a14f6373e27478acfc")
|
||||
version("0.36.0", commit="0d5d169d7d64d648a22f9043837c93bc784e71ed")
|
||||
|
@ -22,9 +22,11 @@ class RBiocio(RPackage):
|
||||
|
||||
bioc = "BiocIO"
|
||||
|
||||
version("1.8.0", commit="4a719fa41e014b7b948f7b245e581ede6a04eda1")
|
||||
version("1.6.0", commit="60c8aa1a961e43bf0ee5d563a6d9fcec84f7f8f8")
|
||||
version("1.4.0", commit="c335932526a38c75dbfa4970c1d90b8a21466d37")
|
||||
|
||||
depends_on("r@4.0.0:", type=("build", "run"))
|
||||
depends_on("r@4.0:", type=("build", "run"), when="@1.8.0:")
|
||||
depends_on("r-biocgenerics", type=("build", "run"))
|
||||
depends_on("r-s4vectors", type=("build", "run"))
|
||||
|
@ -21,6 +21,7 @@ class RBiocneighbors(RPackage):
|
||||
|
||||
bioc = "BiocNeighbors"
|
||||
|
||||
version("1.16.0", commit="3b227beead424314aab5ef847222f8f4243c684f")
|
||||
version("1.14.0", commit="670a1bd4d82636d28fbff50cea2157e16bb1a858")
|
||||
version("1.12.0", commit="3c8a290f75adc944b408e6e77a36f3a0c1509c4c")
|
||||
version("1.8.2", commit="889bc91f8cb45d210b47ae5c0b9cfb86fb071ca2")
|
||||
|
@ -15,6 +15,7 @@ class RBiocparallel(RPackage):
|
||||
|
||||
bioc = "BiocParallel"
|
||||
|
||||
version("1.32.1", commit="6c85dbad596a74a6d3022173a4a11c6b81a4a2c2")
|
||||
version("1.30.4", commit="1229ebe9f6d8305f9f61e562464f83f9ba86e699")
|
||||
version("1.30.2", commit="e7e109f7a94dbfbc50f926be030c7ad8c1a053db")
|
||||
version("1.28.3", commit="2f9d88ad83659939e7911d49c2d24d2cd599c7cc")
|
||||
@ -30,3 +31,4 @@ class RBiocparallel(RPackage):
|
||||
depends_on("r-snow", type=("build", "run"))
|
||||
depends_on("r-codetools", type=("build", "run"), when="@1.30.4:")
|
||||
depends_on("r-bh", type=("build", "run"), when="@1.12.0:")
|
||||
depends_on("r-cpp11", type=("build", "run"), when="@1.32.1:")
|
||||
|
@ -17,6 +17,7 @@ class RBiocsingular(RPackage):
|
||||
|
||||
bioc = "BiocSingular"
|
||||
|
||||
version("1.14.0", commit="6dc42b30110e498f6694f18037f991c1006c71b7")
|
||||
version("1.12.0", commit="7d1b8f4954e9e6f2c30a5111cdab9aabc8bcc3a6")
|
||||
version("1.10.0", commit="6615ae8cb124aba6507447c1081bd2eba655e57d")
|
||||
version("1.6.0", commit="11baf1080d6f791439cd5d97357589d6451643d9")
|
||||
|
@ -14,6 +14,7 @@ class RBiocstyle(RPackage):
|
||||
|
||||
bioc = "BiocStyle"
|
||||
|
||||
version("2.26.0", commit="add035498bdce76d71a0afa22a063c2d8e5588bc")
|
||||
version("2.24.0", commit="53095b534b7e6c80a33a67b5f2db0db8f00db902")
|
||||
version("2.22.0", commit="86250b637afa3a3463fac939b99c0402b47876ea")
|
||||
version("2.18.1", commit="956f0654e8e18882ba09305742401128c9c7d47d")
|
||||
|
@ -14,6 +14,7 @@ class RBiocversion(RPackage):
|
||||
|
||||
bioc = "BiocVersion"
|
||||
|
||||
version("3.16.0", commit="c681e06fe30ea6815f958c1a3c74c090863680ba")
|
||||
version("3.15.2", commit="818ab03b6a3551993b712e3702126040f9fb7600")
|
||||
version("3.14.0", commit="aa56d93d0ea5dcdbf301f120502981740fd91e1e")
|
||||
version("3.12.0", commit="23b971963c6b73550a7e330dab5a046d58ce0223")
|
||||
|
@ -24,6 +24,7 @@ class RBiomart(RPackage):
|
||||
|
||||
bioc = "biomaRt"
|
||||
|
||||
version("2.54.0", commit="4fb88fb56c684d5678f8288ba05db193e4881758")
|
||||
version("2.52.0", commit="cf4932ac02686da45ea36ff5137fa63cead8860b")
|
||||
version("2.50.3", commit="83a519ac13d73dc545cb6aafde5f4b5001e9e08f")
|
||||
version("2.46.2", commit="90d6abfdfa04259006f7b47efb10271ada76aec1")
|
||||
|
@ -21,6 +21,7 @@ class RBiomformat(RPackage):
|
||||
|
||||
bioc = "biomformat"
|
||||
|
||||
version("1.26.0", commit="f851ba2428b57769f6fbb287874bad0dc84dd69c")
|
||||
version("1.24.0", commit="4e14692dbcc34c3bd51defd74c728df5de9d0829")
|
||||
version("1.22.0", commit="ab7c6411a038fec010baa72e663f362fd972cb34")
|
||||
version("1.18.0", commit="dc18859c139f4d76805adb6f01e199573cdd5a8b")
|
||||
|
@ -15,6 +15,7 @@ class RBiostrings(RPackage):
|
||||
|
||||
bioc = "Biostrings"
|
||||
|
||||
version("2.66.0", commit="3470ca7da798971e2c3a595d8dc8d0d86f14dc53")
|
||||
version("2.64.1", commit="ffe263e958463bd1edb5d5d9316cfd89905be53c")
|
||||
version("2.64.0", commit="c7ad3c7af607bc8fe4a5e1c37f09e6c9bf70b4f6")
|
||||
version("2.62.0", commit="53ed287e03d16fa523789af3131c60375ccf587f")
|
||||
@ -41,10 +42,12 @@ class RBiostrings(RPackage):
|
||||
depends_on("r-iranges@2.13.24:", type=("build", "run"), when="@2.48.0:")
|
||||
depends_on("r-iranges@2.23.9:", type=("build", "run"), when="@2.58.0:")
|
||||
depends_on("r-iranges@2.30.1:", type=("build", "run"), when="@2.64.1:")
|
||||
depends_on("r-iranges@2.31.2:", type=("build", "run"), when="@2.66.0:")
|
||||
depends_on("r-xvector@0.11.6:", type=("build", "run"))
|
||||
depends_on("r-xvector@0.19.8:", type=("build", "run"), when="@2.48.0:")
|
||||
depends_on("r-xvector@0.21.4:", type=("build", "run"), when="@2.50.2:")
|
||||
depends_on("r-xvector@0.23.2:", type=("build", "run"), when="@2.52.0:")
|
||||
depends_on("r-xvector@0.29.2:", type=("build", "run"), when="@2.58.0:")
|
||||
depends_on("r-xvector@0.37.1:", type=("build", "run"), when="@2.66.0:")
|
||||
depends_on("r-genomeinfodb", type=("build", "run"), when="@2.62.0:")
|
||||
depends_on("r-crayon", type=("build", "run"), when="@2.58.0:")
|
||||
|
@ -16,6 +16,7 @@ class RBiovizbase(RPackage):
|
||||
|
||||
bioc = "biovizBase"
|
||||
|
||||
version("1.46.0", commit="a47060cfb68e3f3b4876114af932823aed5d2d57")
|
||||
version("1.44.0", commit="a8f05c56c27b278524033cb896a6c97f3ee0081c")
|
||||
version("1.42.0", commit="f1627b2b567471837daca6e763acfc3e13937461")
|
||||
version("1.38.0", commit="d0f3362e0ad0e90b4b1d3e47b13ed57907d03403")
|
||||
|
@ -16,6 +16,7 @@ class RBluster(RPackage):
|
||||
|
||||
bioc = "bluster"
|
||||
|
||||
version("1.8.0", commit="156115c8960c0b66b2c588d9fd8bbdfe56e5f0be")
|
||||
version("1.6.0", commit="ff86c7d8d36233e838d4f00e6a4e173e7bf16816")
|
||||
|
||||
depends_on("r-cluster", type=("build", "run"))
|
||||
|
@ -19,13 +19,13 @@ class RBsgenomeHsapiensUcscHg19(RPackage):
|
||||
|
||||
version(
|
||||
"1.4.3",
|
||||
sha256="5bfa65d7836449d9b30c356968497cdfaa98be48c4e329e71e8f8a120f3e9d1a",
|
||||
url="https://bioconductor.org/packages/3.12/data/annotation/src/contrib/BSgenome.Hsapiens.UCSC.hg19_1.4.3.tar.gz",
|
||||
sha256="5bfa65d7836449d9b30c356968497cdfaa98be48c4e329e71e8f8a120f3e9d1a",
|
||||
)
|
||||
version(
|
||||
"1.4.0",
|
||||
sha256="88f515e5c27dd11d10654250e3a0a9389e4dfeb0b1c2d43419aa7086e6c516f8",
|
||||
url="https://bioconductor.org/packages/3.10/data/annotation/src/contrib/BSgenome.Hsapiens.UCSC.hg19_1.4.0.tar.gz",
|
||||
sha256="88f515e5c27dd11d10654250e3a0a9389e4dfeb0b1c2d43419aa7086e6c516f8",
|
||||
)
|
||||
|
||||
depends_on("r-bsgenome@1.33.5:", type=("build", "run"))
|
||||
|
@ -14,6 +14,7 @@ class RBsgenome(RPackage):
|
||||
|
||||
bioc = "BSgenome"
|
||||
|
||||
version("1.66.1", commit="d1efdfa8e7242bc0f54cc1c3a9583ea555c924f6")
|
||||
version("1.64.0", commit="59cdebde613e9702985c003f699f4aea2b0f0e7b")
|
||||
version("1.62.0", commit="9b1859e11ffa082833f035a45274af6e4e83e863")
|
||||
version("1.58.0", commit="3a4926e03a7a1d7140a10c1b2bf6090808470145")
|
||||
|
@ -14,6 +14,7 @@ class RBsseq(RPackage):
|
||||
|
||||
bioc = "bsseq"
|
||||
|
||||
version("1.34.0", commit="98239c07d74e1362c7ba2a3bf4f6119830fc95dc")
|
||||
version("1.32.0", commit="a0c1eacbc479c57bd836e885e162c28bbe08e115")
|
||||
version("1.30.0", commit="7eb5223e9ee02fd08a52be56eaa9316a67c0d66b")
|
||||
version("1.26.0", commit="fae32292687625012a2938a48c93df55ad4257b5")
|
||||
|
@ -13,6 +13,7 @@ class RBumphunter(RPackage):
|
||||
|
||||
bioc = "bumphunter"
|
||||
|
||||
version("1.40.0", commit="3de207a3659859737d4c748fc8023694943da43b")
|
||||
version("1.38.0", commit="06e2fa87b342d48793d0d2f1f7d94a95a6613995")
|
||||
version("1.36.0", commit="db50fcf7798c2eddfe48fd510d081dda82f2ee4e")
|
||||
version("1.32.0", commit="b7d39c2a6385ca217dceefc918b3ccd5c31bbaa0")
|
||||
|
@ -14,6 +14,7 @@ class RCategory(RPackage):
|
||||
|
||||
bioc = "Category"
|
||||
|
||||
version("2.64.0", commit="b512cbeb22fc50a2f6d767a2eef356fb143a974e")
|
||||
version("2.62.0", commit="0fe801c0c443aebd5d4cefa8c30e4e7d0931b673")
|
||||
version("2.60.0", commit="55210d8c539474954d18cf913a219dce883eac2e")
|
||||
version("2.56.0", commit="ad478caa9d693dbc2770608e79dd852375b9a223")
|
||||
|
@ -16,6 +16,7 @@ class RChamp(RPackage):
|
||||
|
||||
bioc = "ChAMP"
|
||||
|
||||
version("2.28.0", commit="3d27ac67a738afea8cc9ece6ea1301120e4b48f7")
|
||||
version("2.26.0", commit="1548910bf53e1e5f7a8d80c83b742a94297d8a34")
|
||||
version("2.24.0", commit="7ba19da74b61e1c40ced162ba753f0f9b9c7647a")
|
||||
version("2.20.1", commit="99ea0463bce59f5b06bcc91f479dcd4065074896")
|
||||
|
@ -14,6 +14,7 @@ class RChampdata(RPackage):
|
||||
|
||||
bioc = "ChAMPdata"
|
||||
|
||||
version("2.30.0", commit="6e05b8f7b004b1a5185ec4b387c32725e8bd95cb")
|
||||
version("2.28.0", commit="601555bf599828b6cfa125beffa51aebccdc8503")
|
||||
version("2.26.0", commit="ea7882707921af33eefab5133a1ccd4a409f045d")
|
||||
version("2.22.0", commit="eeedd4c477fac79f00743da8ff7da064221c5f3d")
|
||||
|
@ -15,6 +15,7 @@ class RChipseq(RPackage):
|
||||
|
||||
maintainers = ["dorton21"]
|
||||
|
||||
version("1.48.0", commit="9c78296001b6dd4102318879c8504dac70015822")
|
||||
version("1.46.0", commit="76b00397cd117d5432158f50fc1032d50485bd24")
|
||||
version("1.44.0", commit="b64d0d28e9fcf0fdab9a7f9c521baf729426a594")
|
||||
version("1.40.0", commit="84bcbc0b7ad732730b5989a308f1624a6a358df1")
|
||||
|
@ -15,6 +15,7 @@ class RClusterprofiler(RPackage):
|
||||
|
||||
bioc = "clusterProfiler"
|
||||
|
||||
version("4.6.0", commit="2644118c36a3aa14408bc0c97ac20a545e40344d")
|
||||
version("4.4.4", commit="9fca9a45ca1793884d8dcfd0f077353dbf75df29")
|
||||
version("4.4.1", commit="daad11fb80be2dd9b825e0b484815a0a2b1592a4")
|
||||
version("4.2.2", commit="4ebb9de8e03eedc971f54a57cf5bf1b250ed43d5")
|
||||
@ -34,12 +35,14 @@ class RClusterprofiler(RPackage):
|
||||
depends_on("r-dose@3.3.2:", type=("build", "run"), when="@3.6.0:")
|
||||
depends_on("r-dose@3.5.1:", type=("build", "run"), when="@3.8.1:")
|
||||
depends_on("r-dose@3.13.1:", type=("build", "run"), when="@3.18.0:")
|
||||
depends_on("r-dose@3.23.2:", type=("build", "run"), when="@4.6.0:")
|
||||
depends_on("r-dplyr", type=("build", "run"), when="@3.18.0:")
|
||||
depends_on("r-enrichplot@0.99.7:", type=("build", "run"), when="@3.8.1:")
|
||||
depends_on("r-enrichplot@1.9.3:", type=("build", "run"), when="@3.18.0:")
|
||||
depends_on("r-go-db", type=("build", "run"))
|
||||
depends_on("r-gosemsim", type=("build", "run"))
|
||||
depends_on("r-gosemsim@2.0.0:", type=("build", "run"), when="@3.4.4:3.6.0")
|
||||
depends_on("r-gson@0.0.7:", type=("build", "run"), when="@4.6.0:")
|
||||
depends_on("r-magrittr", type=("build", "run"))
|
||||
depends_on("r-plyr", type=("build", "run"))
|
||||
depends_on("r-qvalue", type=("build", "run"))
|
||||
|
@ -14,6 +14,7 @@ class RCner(RPackage):
|
||||
|
||||
bioc = "CNEr"
|
||||
|
||||
version("1.34.0", commit="878de98d18f6f959ad5e014ecd8165d3105d8b48")
|
||||
version("1.32.0", commit="1c92f3d7f3dccf76ab7d54f286117b09bc470b8f")
|
||||
version("1.30.0", commit="e682f2a7c8ebb561c872cf51a58ba36eed341187")
|
||||
version("1.26.0", commit="e5e582da6feeae0618c4460f16ece724215e3b20")
|
||||
|
@ -22,6 +22,7 @@ class RCodex(RPackage):
|
||||
|
||||
bioc = "CODEX"
|
||||
|
||||
version("1.30.0", commit="0694f11be9e0b02ab15047d01db2afce943f92d8")
|
||||
version("1.28.0", commit="c707497bd93aa4a0516fcf3671a64997c28c9f67")
|
||||
version("1.26.0", commit="729fd10bd42d12edcedd65b5a8fb1579e5949718")
|
||||
version("1.22.0", commit="aa0ee4278111a46e0c790312b0526ba07aab22eb")
|
||||
|
@ -16,6 +16,7 @@ class RComplexheatmap(RPackage):
|
||||
|
||||
bioc = "ComplexHeatmap"
|
||||
|
||||
version("2.14.0", commit="57fcaa040b08917c97fb66b963eb240d5fd5a8c7")
|
||||
version("2.12.1", commit="2c5fe70724219008174d4e6f83189cddbd895ec6")
|
||||
version("2.12.0", commit="8a5f060b06646f9d6a5032832ea72e3f183ca5d7")
|
||||
version("2.10.0", commit="170df82a1568e879e4019e0ff6feb0047851684f")
|
||||
|
@ -14,6 +14,7 @@ class RCtc(RPackage):
|
||||
|
||||
bioc = "ctc"
|
||||
|
||||
version("1.72.0", commit="0a4b464e1768e6407c1c2ce64ec4ae5a4577be65")
|
||||
version("1.70.0", commit="05dc046ecfddbc1eeadf77e8f3ec0ce054794437")
|
||||
version("1.68.0", commit="c2733534ef9d948e07ea654d1998a67ed8f7a98a")
|
||||
version("1.64.0", commit="35dbe620a21056b8f69890e6f9a7c320528d8621")
|
||||
|
@ -13,6 +13,7 @@ class RDecipher(RPackage):
|
||||
|
||||
bioc = "DECIPHER"
|
||||
|
||||
version("2.26.0", commit="7de99ec5e79f1f645f29dfbe24d2a106c2b0e69a")
|
||||
version("2.24.0", commit="437e60005ab281bd836f47756a367795bc16755d")
|
||||
version("2.22.0", commit="45da5cab5869d83af797aa82b08ebcd24f5bdab3")
|
||||
version("2.18.1", commit="6a708421550e6705d05e2fb50a0f5ab4f9041cb0")
|
||||
|
@ -20,6 +20,7 @@ class RDelayedarray(RPackage):
|
||||
|
||||
bioc = "DelayedArray"
|
||||
|
||||
version("0.24.0", commit="68ee3d0626c234ee1e9248a6cb95b901e4b3ad90")
|
||||
version("0.22.0", commit="4a5afd117b189b40bd409c7aff60e09d41797472")
|
||||
version("0.20.0", commit="829b52916ec54bb4f1a3c6f06c9955f3e28b3592")
|
||||
version("0.16.1", commit="c95eba771ad3fee1b49ec38c51cd8fd1486feadc")
|
||||
@ -37,6 +38,7 @@ class RDelayedarray(RPackage):
|
||||
depends_on("r-biocgenerics@0.27.1:", type=("build", "run"), when="@0.8.0:")
|
||||
depends_on("r-biocgenerics@0.31.5:", type=("build", "run"), when="@0.16.1:")
|
||||
depends_on("r-biocgenerics@0.37.0:", type=("build", "run"), when="@0.20.1:")
|
||||
depends_on("r-biocgenerics@0.43.4:", type=("build", "run"), when="@0.24.0:")
|
||||
depends_on("r-matrixgenerics@1.1.3:", type=("build", "run"), when="@0.16.1:")
|
||||
depends_on("r-s4vectors@0.14.3:", type=("build", "run"))
|
||||
depends_on("r-s4vectors@0.15.3:", type=("build", "run"), when="@0.4.1:")
|
||||
|
@ -18,6 +18,7 @@ class RDelayedmatrixstats(RPackage):
|
||||
|
||||
bioc = "DelayedMatrixStats"
|
||||
|
||||
version("1.20.0", commit="1ed14250e8731e60bccb44946cafad4c2b3ac5b0")
|
||||
version("1.18.1", commit="9c4658d11fc20b7d88e05b9c52140c2ca8a65768")
|
||||
version("1.18.0", commit="50c9aab259b6e8f68abf44b78122662a41c8bf47")
|
||||
version("1.16.0", commit="d44a3d765769cb022193428a77af25bf19916be7")
|
||||
@ -41,7 +42,7 @@ class RDelayedmatrixstats(RPackage):
|
||||
depends_on("r-matrixstats@0.60.0:", type=("build", "run"), when="@1.16.0:")
|
||||
depends_on("r-sparsematrixstats", type=("build", "run"), when="@1.12.2:")
|
||||
depends_on("r-matrix", type=("build", "run"))
|
||||
depends_on("r-matrix@1.5.0:", type=("build", "run"), when="@1.18.1:")
|
||||
depends_on("r-matrix@1.5-0:", type=("build", "run"), when="@1.18.1:")
|
||||
depends_on("r-s4vectors", type=("build", "run"))
|
||||
depends_on("r-s4vectors@0.17.5:", type=("build", "run"), when="@1.2.0:")
|
||||
depends_on("r-iranges", type=("build", "run"))
|
||||
|
@ -17,6 +17,7 @@ class RDeseq2(RPackage):
|
||||
homepage = "https://bioconductor.org/packages/DESeq2"
|
||||
git = "https://git.bioconductor.org/packages/DESeq2.git"
|
||||
|
||||
version("1.38.0", commit="0e059f425d4ce6a5203685a4ad434f15bbd6e211")
|
||||
version("1.36.0", commit="2800b78ae52c0600f7e603c54af59beed3a2ed17")
|
||||
version("1.34.0", commit="25d4f74be59548122ccfbe8687d30c0bae5cf49a")
|
||||
version("1.30.0", commit="f4b47b208ee26ab23fe65c345f907fcfe70b3f77")
|
||||
|
@ -21,6 +21,7 @@ class RDexseq(RPackage):
|
||||
|
||||
maintainers = ["dorton21"]
|
||||
|
||||
version("1.44.0", commit="9660d7372d5ced1a7e324ed9a61b935023b7d135")
|
||||
version("1.42.0", commit="d91de62a27d0cab2ef12ef1a5f23dc2f7a0cfadd")
|
||||
version("1.40.0", commit="7d2d639b3a157e443058fc557132cd2629bb36f3")
|
||||
version("1.36.0", commit="f0a361af6954fcc2abb2db801c26e303570669b2")
|
||||
|
@ -18,6 +18,7 @@ class RDirichletmultinomial(RPackage):
|
||||
|
||||
bioc = "DirichletMultinomial"
|
||||
|
||||
version("1.40.0", commit="200176f8c72ff127788c500629b71872bc6b1f83")
|
||||
version("1.38.0", commit="b4de83d354e974fdb7cb3526d029487f24aab670")
|
||||
version("1.36.0", commit="926baff6c75cb498945c5895f25cc143c907a357")
|
||||
version("1.32.0", commit="6949abab2462b2c09f7a0ca5b5cbf0c95a40ad16")
|
||||
|
@ -17,6 +17,7 @@ class RDmrcate(RPackage):
|
||||
|
||||
bioc = "DMRcate"
|
||||
|
||||
version("2.12.0", commit="560dd5067b05715631739d0fb58ef9cebdbf7078")
|
||||
version("2.10.0", commit="81e83701da5c55ac83d0e0b5e640a9d431f09551")
|
||||
version("2.8.5", commit="c65dc79a33a047c10932a98b3383709a6bcb8903")
|
||||
version("2.4.1", commit="bc6242a0291a9b997872f575a4417d38550c9550")
|
||||
|
@ -15,6 +15,7 @@ class RDnacopy(RPackage):
|
||||
|
||||
bioc = "DNAcopy"
|
||||
|
||||
version("1.72.0", commit="1a1ae854c3425aee68b060e3e7ab788db5bed08c")
|
||||
version("1.70.0", commit="9595d0ad7c78af4ed568cbd210b894d3350eae0a")
|
||||
version("1.68.0", commit="08f039f58bc2f5ed2cc3117ae817dbac333002a6")
|
||||
version("1.64.0", commit="01650266ea7a4e5c600de545fe70a1103e79b2d8")
|
||||
|
@ -18,6 +18,7 @@ class RDose(RPackage):
|
||||
|
||||
bioc = "DOSE"
|
||||
|
||||
version("3.24.1", commit="a78995d3b12bd4baabb69c497102687814cd4c68")
|
||||
version("3.22.1", commit="6b711a0f076a9fefcb00ddef66e8f198039e6dfa")
|
||||
version("3.22.0", commit="242ac1b746c44fbbf281fbe6e5e4424a8dc74375")
|
||||
version("3.20.1", commit="bf434f24d035217822cb1b0ab08a486b9a53edb4")
|
||||
@ -32,11 +33,12 @@ class RDose(RPackage):
|
||||
depends_on("r@3.4.0:", type=("build", "run"), when="@3.6.1:")
|
||||
depends_on("r@3.5.0:", type=("build", "run"), when="@3.16.0:")
|
||||
depends_on("r-annotationdbi", type=("build", "run"))
|
||||
depends_on("r-hdo-db", type=("build", "run"), when="@3.24.1:")
|
||||
depends_on("r-biocparallel", type=("build", "run"))
|
||||
depends_on("r-do-db", type=("build", "run"))
|
||||
depends_on("r-fgsea", type=("build", "run"))
|
||||
depends_on("r-ggplot2", type=("build", "run"))
|
||||
depends_on("r-gosemsim@2.0.0:", type=("build", "run"))
|
||||
depends_on("r-gosemsim@2.23.1:", type=("build", "run"), when="@3.24.1:")
|
||||
depends_on("r-qvalue", type=("build", "run"))
|
||||
depends_on("r-reshape2", type=("build", "run"))
|
||||
|
||||
@ -44,3 +46,5 @@ class RDose(RPackage):
|
||||
depends_on("r-scales", type=("build", "run"), when="@3.2.0:3.4.0")
|
||||
depends_on("r-rvcheck", type=("build", "run"), when="@3.4.0")
|
||||
depends_on("r-igraph", type=("build", "run"), when="@3.2.0:3.4.0")
|
||||
depends_on("r-do-db", type=("build", "run"))
|
||||
depends_on("r-do-db", when="@:3.22.1")
|
||||
|
@ -18,6 +18,7 @@ class RDss(RPackage):
|
||||
|
||||
bioc = "DSS"
|
||||
|
||||
version("2.46.0", commit="debfbac4bc741961ba57915d4f2d98534f02cc21")
|
||||
version("2.44.0", commit="b9f44106f139c93564dfb4afab50555d24a657ba")
|
||||
version("2.42.0", commit="33e87450fbb64bb3e321688ff613e83cd40efe48")
|
||||
version("2.38.0", commit="82e65b92e6e227f1f99620362db8b03059e07e98")
|
||||
@ -30,6 +31,7 @@ class RDss(RPackage):
|
||||
depends_on("r-biobase", type=("build", "run"))
|
||||
depends_on("r-biocparallel", type=("build", "run"), when="@2.36.0:")
|
||||
depends_on("r-bsseq", type=("build", "run"))
|
||||
depends_on("r-matrixstats", type=("build", "run"), when="@2.44.0:")
|
||||
|
||||
depends_on("r-delayedarray", type=("build", "run"), when="@2.36.0:2.42.0")
|
||||
depends_on("r-matrixstats", type=("build", "run"), when="@2.44.0:")
|
||||
depends_on("r-matrixstats", when="@:2.44.0")
|
||||
|
@ -19,6 +19,7 @@ class REdger(RPackage):
|
||||
|
||||
bioc = "edgeR"
|
||||
|
||||
version("3.40.0", commit="0b25adcc6b3cb0a8c641964d1274536ee07ee162")
|
||||
version("3.38.4", commit="f5a3bb568a23b34146ac66329a95ee4785093536")
|
||||
version("3.38.1", commit="e58bf52f34ec451096f593126922ad7e5d517f7e")
|
||||
version("3.36.0", commit="c7db03addfc42138a1901834409c02da9d873026")
|
||||
|
@ -16,6 +16,7 @@ class REnrichplot(RPackage):
|
||||
|
||||
bioc = "enrichplot"
|
||||
|
||||
version("1.18.0", commit="61ea941784a1ed6cc604af1c1cc4532b8b5fcea7")
|
||||
version("1.16.2", commit="eeb21345288d96c116ac308649fa772d03760259")
|
||||
version("1.16.1", commit="cff77b622b2312be546714ec437aa4bc585bac87")
|
||||
version("1.14.1", commit="ccf3a6d9b7cd9cffd8de6d6263efdffe59d2ec36")
|
||||
@ -27,9 +28,11 @@ class REnrichplot(RPackage):
|
||||
depends_on("r@3.4.0:", type=("build", "run"))
|
||||
depends_on("r@3.5.0:", type=("build", "run"), when="@1.10.2:")
|
||||
depends_on("r-aplot", type=("build", "run"), when="@1.14.1:")
|
||||
depends_on("r-aplot@0.1.4:", type=("build", "run"), when="@1.18.0:")
|
||||
depends_on("r-dose@3.5.1:", type=("build", "run"))
|
||||
depends_on("r-dose@3.13.1:", type=("build", "run"), when="@1.8.1:")
|
||||
depends_on("r-dose@3.16.0:", type=("build", "run"), when="@1.12.3:")
|
||||
depends_on("r-ggnewscale", type=("build", "run"), when="@1.18.0:")
|
||||
depends_on("r-ggplot2", type=("build", "run"))
|
||||
depends_on("r-ggraph", type=("build", "run"))
|
||||
depends_on("r-igraph", type=("build", "run"))
|
||||
@ -37,6 +40,7 @@ class REnrichplot(RPackage):
|
||||
depends_on("r-purrr", type=("build", "run"), when="@1.2.0:")
|
||||
depends_on("r-rcolorbrewer", type=("build", "run"), when="@1.2.0:")
|
||||
depends_on("r-reshape2", type=("build", "run"))
|
||||
depends_on("r-rlang", type=("build", "run"), when="@1.18.0:")
|
||||
depends_on("r-scatterpie", type=("build", "run"), when="@1.10.2:")
|
||||
depends_on("r-shadowtext", type=("build", "run"), when="@1.10.2:")
|
||||
depends_on("r-gosemsim", type=("build", "run"))
|
||||
@ -52,3 +56,4 @@ class REnrichplot(RPackage):
|
||||
depends_on("r-gridextra", type=("build", "run"), when="@1.2.0:1.4.0")
|
||||
depends_on("r-cowplot", type=("build", "run"))
|
||||
depends_on("r-cowplot", when="@:1.16.1")
|
||||
depends_on("r-cowplot", when="@:1.16.2")
|
||||
|
@ -24,6 +24,7 @@ class REnsembldb(RPackage):
|
||||
|
||||
bioc = "ensembldb"
|
||||
|
||||
version("2.22.0", commit="4dda178a14e080c643bbd8c4dd6378bfe4e6ee9f")
|
||||
version("2.20.2", commit="ac1fb8389efd88099600af298d6bb3384206f9ed")
|
||||
version("2.20.1", commit="e547d184730cfe5e65f59e4f3512395fb1cdba1a")
|
||||
version("2.18.3", commit="e2fcfc0c7700110df070a171d2d542b37ec098f3")
|
||||
@ -40,6 +41,7 @@ class REnsembldb(RPackage):
|
||||
depends_on("r-genomicranges@1.31.18:", type=("build", "run"), when="@2.4.1:")
|
||||
depends_on("r-genomicfeatures@1.23.18:", type=("build", "run"))
|
||||
depends_on("r-genomicfeatures@1.29.10:", type=("build", "run"), when="@2.2.2:")
|
||||
depends_on("r-genomicfeatures@1.49.6:", type=("build", "run"), when="@2.22.0:")
|
||||
depends_on("r-annotationfilter@0.99.7:", type=("build", "run"))
|
||||
depends_on("r-annotationfilter@1.1.9:", type=("build", "run"), when="@2.2.2:")
|
||||
depends_on("r-annotationfilter@1.5.2:", type=("build", "run"), when="@2.6.8:")
|
||||
|
@ -17,6 +17,7 @@ class RExomecopy(RPackage):
|
||||
|
||||
bioc = "exomeCopy"
|
||||
|
||||
version("1.44.0", commit="2dd6598d5fb14d49f7a42e597284c7a929c0cd62")
|
||||
version("1.42.0", commit="ba0979cf5fbdefed841022f2dc0604941315c1b8")
|
||||
version("1.40.0", commit="ebde39be67baace2c326359421fd17f4a02fd4fe")
|
||||
version("1.36.0", commit="cbe3134acbbc9b7d5426ae2f142dc64cadb3fc26")
|
||||
|
@ -18,6 +18,7 @@ class RExperimenthub(RPackage):
|
||||
|
||||
bioc = "ExperimentHub"
|
||||
|
||||
version("2.6.0", commit="557ba29720bce85902a85445dd0435b7356cdd7f")
|
||||
version("2.4.0", commit="bdce35d3a89e8633cc395f28991e6b5d1eccbe8e")
|
||||
version("2.2.1", commit="4e10686fa72baefef5d2990f41a7c44c527a7a7d")
|
||||
version("1.16.1", commit="61d51b7ca968d6cc1befe299e0784d9a19ca51f6")
|
||||
|
@ -16,6 +16,7 @@ class RFgsea(RPackage):
|
||||
|
||||
bioc = "fgsea"
|
||||
|
||||
version("1.24.0", commit="ac74ccd935c15623b8584caa791835aec514144b")
|
||||
version("1.22.0", commit="e4e203aa64faa984e0406fed5d87a422d9df92f2")
|
||||
version("1.20.0", commit="b704f81687dc16afdaafc6d30108c62a067856b2")
|
||||
version("1.16.0", commit="9d9df596c7e160afa18e067b7637cfc465494318")
|
||||
@ -30,7 +31,9 @@ class RFgsea(RPackage):
|
||||
depends_on("r-data-table", type=("build", "run"))
|
||||
depends_on("r-biocparallel", type=("build", "run"))
|
||||
depends_on("r-ggplot2@2.2.0:", type=("build", "run"))
|
||||
depends_on("r-gridextra", type=("build", "run"))
|
||||
depends_on("r-cowplot", type=("build", "run"), when="@1.24.0:")
|
||||
depends_on("r-fastmatch", type=("build", "run"))
|
||||
depends_on("r-matrix", type=("build", "run"), when="@1.6.0:")
|
||||
depends_on("r-bh", type=("build", "run"), when="@1.10.1:")
|
||||
depends_on("r-gridextra", type=("build", "run"))
|
||||
depends_on("r-gridextra", when="@:1.22.0")
|
||||
|
@ -13,6 +13,7 @@ class RGcrma(RPackage):
|
||||
|
||||
bioc = "gcrma"
|
||||
|
||||
version("2.70.0", commit="095f38914525d8812524a3cb38db8075382f8121")
|
||||
version("2.68.0", commit="c14063ff5490fac8d60530826613d728e68b3d66")
|
||||
version("2.66.0", commit="ba134b392def89d36b5639a187e0c25a4353457b")
|
||||
version("2.62.0", commit="b91bdf5bf4e875defedb4d4e3e1e75867773287a")
|
||||
|
@ -24,6 +24,7 @@ class RGdsfmt(RPackage):
|
||||
|
||||
bioc = "gdsfmt"
|
||||
|
||||
version("1.34.0", commit="ab912c393d8eb6dc26f844a13422a29b9ce7265b")
|
||||
version("1.32.0", commit="06f2097cc10b1888739f86e635383a0f2ee7e208")
|
||||
version("1.30.0", commit="d27dde6a70bb2295f5bbc8961152b45ccee7a652")
|
||||
version("1.26.1", commit="bd180b21b1ace120035f0da255cbf6f13088f069")
|
||||
|
@ -13,6 +13,7 @@ class RGenefilter(RPackage):
|
||||
|
||||
bioc = "genefilter"
|
||||
|
||||
version("1.80.0", commit="14fbc2d776916e572583e3c268ea9ba60ed60a9a")
|
||||
version("1.78.0", commit="2f574388971641d3a71858f5c34606c04fcd2ba2")
|
||||
version("1.76.0", commit="8d630fd25f0d2a4101e05e123c3959591203a7ea")
|
||||
version("1.72.1", commit="b01b00a766982ef7d80b90a252085c8c4f085e1b")
|
||||
|
@ -14,6 +14,7 @@ class RGenelendatabase(RPackage):
|
||||
|
||||
bioc = "geneLenDataBase"
|
||||
|
||||
version("1.34.0", commit="e26cf8e3fc20b5d183cbd39b7b28a8cc866f6ead")
|
||||
version("1.32.0", commit="eaa193a2c6d502c6d59113fd42f66761b8730594")
|
||||
version("1.30.0", commit="b3cc755f1ffcbb2eacd9ea45e11f39f1639782b1")
|
||||
version("1.26.0", commit="2724715ae23a6647d1c0c6e934720aad9377d65e")
|
||||
|
@ -14,6 +14,7 @@ class RGenemeta(RPackage):
|
||||
|
||||
bioc = "GeneMeta"
|
||||
|
||||
version("1.70.0", commit="e5db82e04efc4572358abce7e0c09273f94c9d72")
|
||||
version("1.68.0", commit="4213c0205d477660195300a0aa9751972f86bf91")
|
||||
version("1.66.0", commit="c16eb09492f08f6cc0f253fafa3fa5dce35dcdba")
|
||||
version("1.62.0", commit="eb4273ff5867e39592f50b97b454fa5e32b4a9bf")
|
||||
|
@ -13,6 +13,7 @@ class RGeneplotter(RPackage):
|
||||
|
||||
bioc = "geneplotter"
|
||||
|
||||
version("1.76.0", commit="4eb6a787d0c66110ec9a7d34fc76b64030fbde5d")
|
||||
version("1.74.0", commit="ca819565829eac7a9a98e3cafafd6c06a466fddf")
|
||||
version("1.72.0", commit="57a1d830ba7844fda5236af0153d5b5587634f96")
|
||||
version("1.68.0", commit="f1fea7e468fb24fdfa93ef4493600a4d8d183f69")
|
||||
|
@ -14,6 +14,7 @@ class RGenie3(RPackage):
|
||||
|
||||
bioc = "GENIE3"
|
||||
|
||||
version("1.20.0", commit="aea2e686a262f30b16c068241938d04f21251a0d")
|
||||
version("1.18.0", commit="f16b25ef50978a4a497eb2f911e21f2e839fa33c")
|
||||
version("1.16.0", commit="5543b1b883d3a1c92e955de6668444278edc2bdf")
|
||||
version("1.12.0", commit="14289cee9bed113ab35ba03bcaac4a30e5784497")
|
||||
|
@ -17,6 +17,7 @@ class RGenomeinfodb(RPackage):
|
||||
|
||||
bioc = "GenomeInfoDb"
|
||||
|
||||
version("1.34.3", commit="ea6f131f1d1ee61535d6733ce76fabf3c62185fc")
|
||||
version("1.32.4", commit="69df6a5a10027fecf6a6d1c8298f3f686b990d8f")
|
||||
version("1.32.2", commit="2e40af38f00ee86d2c83d140e234c1349baa27de")
|
||||
version("1.30.1", commit="bf8b385a2ffcecf9b41e581794056f267895863d")
|
||||
|
@ -13,6 +13,11 @@ class RGenomeinfodbdata(RPackage):
|
||||
bioc = "GenomeInfoDbData"
|
||||
url = "https://bioconductor.org/packages/release/data/annotation/src/contrib/GenomeInfoDbData_0.99.0.tar.gz"
|
||||
|
||||
version(
|
||||
"1.2.9",
|
||||
url="https://bioconductor.org/packages/3.16/data/annotation/src/contrib/GenomeInfoDbData_1.2.9.tar.gz",
|
||||
sha256="e63a719a8eceefeda39fc95de83e7aa41caad39705efc712a44ab4021adc45fa",
|
||||
)
|
||||
version(
|
||||
"1.2.8",
|
||||
url="https://bioconductor.org/packages/3.15/data/annotation/src/contrib/GenomeInfoDbData_1.2.8.tar.gz",
|
||||
|
@ -16,6 +16,7 @@ class RGenomicalignments(RPackage):
|
||||
|
||||
bioc = "GenomicAlignments"
|
||||
|
||||
version("1.34.0", commit="c6eb78079c8aa21d47c95b3d16a606e8c2c5d799")
|
||||
version("1.32.1", commit="2553580d0b8a8a5fd7835c1446616b39f707b8a9")
|
||||
version("1.32.0", commit="7a660a914a04e2eb0758082b6f64c4124a887ef3")
|
||||
version("1.30.0", commit="2d2c5fce3529c2962fdcefd736d8b7f7c0ec2d54")
|
||||
|
@ -20,6 +20,7 @@ class RGenomicfeatures(RPackage):
|
||||
|
||||
bioc = "GenomicFeatures"
|
||||
|
||||
version("1.50.2", commit="4fc9120ceed9ff59f390c8bbdbd79b212ee35b84")
|
||||
version("1.48.4", commit="06e37dc1847d49d91391264caec877ed33abf359")
|
||||
version("1.48.3", commit="b0ddea0e101e3861928f3ad353348df047d90382")
|
||||
version("1.46.4", commit="d3ab6fd069624904ce7fcdf75dad884473f97975")
|
||||
@ -41,6 +42,7 @@ class RGenomicfeatures(RPackage):
|
||||
depends_on("r-genomeinfodb@1.13.1:", type=("build", "run"), when="@1.30.3:")
|
||||
depends_on("r-genomeinfodb@1.15.4:", type=("build", "run"), when="@1.32.3:")
|
||||
depends_on("r-genomeinfodb@1.25.7:", type=("build", "run"), when="@1.42.1:")
|
||||
depends_on("r-genomeinfodb@1.34.1:", type=("build", "run"), when="@1.50.2:")
|
||||
depends_on("r-genomicranges@1.27.6:", type=("build", "run"))
|
||||
depends_on("r-genomicranges@1.29.14:", type=("build", "run"), when="@1.30.3:")
|
||||
depends_on("r-genomicranges@1.31.17:", type=("build", "run"), when="@1.32.3:")
|
||||
|
@ -22,6 +22,7 @@ class RGenomicranges(RPackage):
|
||||
|
||||
bioc = "GenomicRanges"
|
||||
|
||||
version("1.50.1", commit="6b3fb388ec038fb43f3cd26684ce778ee0e80e81")
|
||||
version("1.48.0", commit="2bce60814db7c20949892587740fb484aa435978")
|
||||
version("1.46.1", commit="e422642f64815cdfee8fc340681ad87a7eafc3bb")
|
||||
version("1.42.0", commit="32baca734b599d60fa13bdbe31c5712e648f538d")
|
||||
@ -46,6 +47,7 @@ class RGenomicranges(RPackage):
|
||||
depends_on("r-iranges@2.15.12:", type=("build", "run"), when="@1.34.0:")
|
||||
depends_on("r-iranges@2.17.1:", type=("build", "run"), when="@1.36.1:")
|
||||
depends_on("r-iranges@2.23.9:", type=("build", "run"), when="@1.42.0:")
|
||||
depends_on("r-iranges@2.31.2:", type=("build", "run"), when="@1.50.1:")
|
||||
depends_on("r-genomeinfodb@1.11.5:", type=("build", "run"))
|
||||
depends_on("r-genomeinfodb@1.13.1:", type=("build", "run"), when="@1.30.3:")
|
||||
depends_on("r-genomeinfodb@1.15.2:", type=("build", "run"), when="@1.32.7:")
|
||||
|
@ -16,6 +16,7 @@ class RGeoquery(RPackage):
|
||||
|
||||
bioc = "GEOquery"
|
||||
|
||||
version("2.66.0", commit="00a954e9f8223607b43cf112943ab575d03a0eb6")
|
||||
version("2.64.2", commit="e9b7f075a4a6a952660443ca93ed392d7a4fd6d7")
|
||||
version("2.62.2", commit="1966c108fe8a58ac39ef53c3c452fd160efa526e")
|
||||
version("2.58.0", commit="6332ca3791ddcfb233b9ad75b5904b3d60f49b93")
|
||||
|
@ -21,6 +21,7 @@ class RGgbio(RPackage):
|
||||
|
||||
bioc = "ggbio"
|
||||
|
||||
version("1.46.0", commit="d9c6cb495c7268bcaaab141231a9038aec8498bc")
|
||||
version("1.44.1", commit="0301d9464e304a8113ea4479185cd358855ca365")
|
||||
version("1.44.0", commit="cb21284a9803917fa76e116adfc456525c95f660")
|
||||
version("1.42.0", commit="3540047ef018957d59fba8af7d3c58e4659f8e26")
|
||||
|
18
var/spack/repos/builtin/packages/r-ggnewscale/package.py
Normal file
18
var/spack/repos/builtin/packages/r-ggnewscale/package.py
Normal file
@ -0,0 +1,18 @@
|
||||
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
||||
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
#
|
||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
from spack.package import *
|
||||
|
||||
|
||||
class RGgnewscale(RPackage):
|
||||
"""Multiple Fill and Colour Scales in 'ggplot2'.
|
||||
|
||||
Use multiple fill and colour scales in 'ggplot2'."""
|
||||
|
||||
cran = "ggnewscale"
|
||||
|
||||
version("0.4.8", sha256="c7fefa6941ecbc789507e59be13fa96327fe2549681a938c43beb06ca22a9700")
|
||||
|
||||
depends_on("r-ggplot2@3.0.0:", type=("build", "run"))
|
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Reference in New Issue
Block a user