heimdall: Astronomy software package (#38328)
* heimdall: Astronomy software package. Requires dedisp and psrdada (included as part of this commit) * Updated packages to align with Spack's style Minor updates based on wdconinc's comments regarding Spack's style guide * [@spackbot] updating style on behalf of aweaver1fandm * Minor edits to fix copyright year and dedisp install Fixed copyright year to be 2024 instead of 2023 Removed the overridden version of install and created a preinstall function to create the missing lib and inc directories, therefore allowing the default install to run Here is output from the spack install of heimdall showing successful build with cuda. If necessary I do a spack clean and freshly install it ./spack install heimdall +cuda cuda_arch=86 [+] /home/htony/spack/opt/spack/linux-ubuntu22.04-zen3/gcc-11.3.0/libiconv-1.17-enpmbhsi3kztebwmpclpub2afhlbr3gy [+] /home/htony/spack/opt/spack/linux-ubuntu22.04-zen3/gcc-11.3.0/xz-5.4.1-pte76kujkezxb3laqse3o4sctlbygsaw [+] /home/htony/spack/opt/spack/linux-ubuntu22.04-zen3/gcc-11.3.0/zlib-1.2.13-utlfo5ltxz5v5bckirn5v3amtbxjdvwh [+] /home/htony/spack/opt/spack/linux-ubuntu22.04-zen3/gcc-11.3.0/bzip2-1.0.8-x6navz7ucgfnb5xq7aelqmgd4zxsz5bs [+] /home/htony/spack/opt/spack/linux-ubuntu22.04-zen3/gcc-11.3.0/libmd-1.0.4-ncomhrodpdul4dm64o6b7426fhmc2u64 [+] /home/htony/spack/opt/spack/linux-ubuntu22.04-zen3/gcc-11.3.0/ncurses-6.4-c77h34rooycbzapxjvc27sg5td5jiwyb [+] /home/htony/spack/opt/spack/linux-ubuntu22.04-zen3/gcc-11.3.0/zstd-1.5.5-eporpybumydxveg5rwtfzysrsu4eqzcv [+] /home/htony/spack/opt/spack/linux-ubuntu22.04-zen3/gcc-11.3.0/libffi-3.4.4-vskntokaojclfqxjfzkbyirkeogddbpx [+] /home/htony/spack/opt/spack/linux-ubuntu22.04-zen3/gcc-11.3.0/libxcrypt-4.4.33-gtpn32p6mxztul3c3dxzqj7gvcyh555j [+] /home/htony/spack/opt/spack/linux-ubuntu22.04-zen3/gcc-11.3.0/util-linux-uuid-2.38.1-g322a5peqjaad6gl5q64cdu4qo7kvw6o [+] /home/htony/spack/opt/spack/linux-ubuntu22.04-zen3/gcc-11.3.0/libxml2-2.10.3-pza3kz2mtbncbbeim6rejfqkgftnf4rz [+] /home/htony/spack/opt/spack/linux-ubuntu22.04-zen3/gcc-11.3.0/openssl-1.1.1t-adbquvgg4qpc3vq6jynf44qzq3gfwrv5 [+] /home/htony/spack/opt/spack/linux-ubuntu22.04-zen3/gcc-11.3.0/pigz-2.7-e7mxj4ya2u4a6zb4hu64g7docujmkxeb [+] /home/htony/spack/opt/spack/linux-ubuntu22.04-zen3/gcc-11.3.0/libbsd-0.11.7-wh4xleivbe7wndiqt5nsehzlfrccnjcg [+] /home/htony/spack/opt/spack/linux-ubuntu22.04-zen3/gcc-11.3.0/readline-8.2-hhb647bwmbcj7iwpmtetbylninfm5rxf [+] /home/htony/spack/opt/spack/linux-ubuntu22.04-zen3/gcc-11.3.0/cuda-11.7.1-osue2sx5rv7dgzhsmaemydpwhyribxng [+] /home/htony/spack/opt/spack/linux-ubuntu22.04-zen3/gcc-11.3.0/tar-1.34-35f5gki2ycxmy5zd7zs5tsvp3xoszxum [+] /home/htony/spack/opt/spack/linux-ubuntu22.04-zen3/gcc-11.3.0/expat-2.5.0-4gizyhhqklciuyrbyinq2tdggt73gds4 [+] /home/htony/spack/opt/spack/linux-ubuntu22.04-zen3/gcc-11.3.0/gdbm-1.23-w3uzihtubj2iwv6es55fis6nt2q5zwlr [+] /home/htony/spack/opt/spack/linux-ubuntu22.04-zen3/gcc-11.3.0/sqlite-3.40.1-m4ntzvuupsnbtkdfbz7oqpbjdlaffp2a [+] /home/htony/spack/opt/spack/linux-ubuntu22.04-zen3/gcc-11.3.0/dedisp-1.0-pq6r3jnyxq6jzoygz3fp2e6jc2ojpvap [+] /home/htony/spack/opt/spack/linux-ubuntu22.04-zen3/gcc-11.3.0/gettext-0.21.1-hglzdeadmgkzjb76bmemt6dnulfkrpha [+] /home/htony/spack/opt/spack/linux-ubuntu22.04-zen3/gcc-11.3.0/python-3.10.10-khu36qq4p2te7jf475ewr2h7egidekfl [+] /home/htony/spack/opt/spack/linux-ubuntu22.04-zen3/gcc-11.3.0/psrdada-master-by4w6mrpcfnoihlhos2jcfo2roiyagaz [+] /home/htony/spack/opt/spack/linux-ubuntu22.04-zen3/gcc-11.3.0/heimdall-1.0-ohtdnltuhhejysshcert25h6nmuvluqp * [@spackbot] updating style on behalf of aweaver1fandm
This commit is contained in:
Tony Weaver
GitHub
parent
7cb64e465f
commit
ce900346cc
42
var/spack/repos/builtin/packages/dedisp/package.py
Normal file
42
var/spack/repos/builtin/packages/dedisp/package.py
Normal file
@ -0,0 +1,42 @@
|
||||
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
#
|
||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
from spack.package import *
|
||||
|
||||
|
||||
class Dedisp(MakefilePackage, CudaPackage):
|
||||
"""GPU-based dedispersion package."""
|
||||
|
||||
homepage = "https://github.com/ajameson/dedisp"
|
||||
git = "https://github.com/ajameson/dedisp.git"
|
||||
|
||||
maintainers("aweaver1fandm")
|
||||
|
||||
version("master", branch="master", preferred=True)
|
||||
|
||||
conflicts("~cuda", msg="You must specify +cuda")
|
||||
conflicts("cuda@11.8")
|
||||
conflicts("cuda_arch=none", msg="You must specify the CUDA architecture")
|
||||
|
||||
depends_on("cuda", type="build")
|
||||
|
||||
def edit(self, spec, prefix):
|
||||
# Build process required some edits to Makefile.inc instead of using command-line flags
|
||||
makefile = FileFilter("Makefile.inc")
|
||||
|
||||
makefile.filter(r"^\s*CUDA_PATH\s*\?=.*", "CUDA_PATH ?= " + spec["cuda"].prefix)
|
||||
makefile.filter(
|
||||
r"^\s*GPU_ARCH\s*\?=.*", "GPU_ARCH ?= sm_" + spec.variants["cuda_arch"].value[0]
|
||||
)
|
||||
makefile.filter(r"^\s*INSTALL_DIR\s*\?=.*", "INSTALL_DIR ?= " + prefix)
|
||||
|
||||
@run_before("install")
|
||||
def preinstall(self, spec, prefix):
|
||||
# The $PREFIX/dedisp/include and $PREFIX/dedisp/lib directories don't seem
|
||||
# to be created automatically by the software's Makefile so manually create them
|
||||
libdir = join_path(prefix, "lib")
|
||||
incdir = join_path(prefix, "include")
|
||||
mkdirp(libdir)
|
||||
mkdirp(incdir)
|
||||
47
var/spack/repos/builtin/packages/heimdall/package.py
Normal file
47
var/spack/repos/builtin/packages/heimdall/package.py
Normal file
@ -0,0 +1,47 @@
|
||||
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
#
|
||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
from spack.package import *
|
||||
|
||||
|
||||
class Heimdall(AutotoolsPackage, CudaPackage):
|
||||
"""GPU accelerated transient detection pipeline"""
|
||||
|
||||
homepage = "https://sourceforge.net/projects/heimdall-astro/"
|
||||
git = "https://git.code.sf.net/p/heimdall-astro/code"
|
||||
|
||||
maintainers("aweaver1fandm")
|
||||
|
||||
version("master", branch="master", preferred=True)
|
||||
|
||||
conflicts("~cuda", msg="You must specify +cuda")
|
||||
conflicts("cuda@11.8")
|
||||
conflicts("cuda_arch=none", msg="You must specify the CUDA architecture")
|
||||
|
||||
depends_on("autoconf", type="build")
|
||||
depends_on("automake", type="build")
|
||||
depends_on("libtool", type="build")
|
||||
depends_on("cuda")
|
||||
|
||||
# Pass the cuda architecture to DEDISP and PSRDADA for building
|
||||
for arch in CudaPackage.cuda_arch_values:
|
||||
depends_on(f"dedisp cuda_arch={arch}", when=f"cuda_arch={arch}")
|
||||
|
||||
depends_on(f"psrdada cuda_arch={arch}", when=f"cuda_arch={arch}")
|
||||
|
||||
def setup_run_environment(self, env):
|
||||
env.prepend_path("PATH", self.spec["psrdada"].prefix.bin)
|
||||
env.prepend_path("PATH", self.prefix.bin)
|
||||
env.prepend_path("LD_LIBRARY_PATH", self.spec["dedisp"].prefix.lib)
|
||||
env.prepend_path("LD_LIBRARY_PATH", self.spec["cuda"].prefix.lib)
|
||||
|
||||
def configure_args(self):
|
||||
# Required flags for configure
|
||||
args = [
|
||||
f"--with-psrdada-dir={self.spec['psrdada'].prefix}",
|
||||
f"--with-dedisp-dir={self.spec['dedisp'].prefix}",
|
||||
f"--with-cuda-dir={self.spec['cuda'].prefix}",
|
||||
]
|
||||
return args
|
||||
30
var/spack/repos/builtin/packages/psrdada/package.py
Normal file
30
var/spack/repos/builtin/packages/psrdada/package.py
Normal file
@ -0,0 +1,30 @@
|
||||
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
#
|
||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
from spack.package import *
|
||||
|
||||
|
||||
class Psrdada(AutotoolsPackage, CudaPackage):
|
||||
"""Open source software to process some types of astronomy data."""
|
||||
|
||||
homepage = "https://psrdada.sourceforge.net/"
|
||||
git = "https://git.code.sf.net/p/psrdada/code"
|
||||
|
||||
maintainers("aweaver1fandm")
|
||||
|
||||
version("master", branch="master", preferred=True)
|
||||
|
||||
conflicts("~cuda", msg="You must specify +cuda")
|
||||
conflicts("cuda@11.8")
|
||||
conflicts("cuda_arch=none", msg="You must specify the CUDA architecture")
|
||||
|
||||
depends_on("autoconf", type="build")
|
||||
depends_on("automake", type="build")
|
||||
depends_on("libtool", type="build")
|
||||
depends_on("nasm", type="build")
|
||||
depends_on("pkgconf", type="build")
|
||||
depends_on("fftw@3.3:", type="build")
|
||||
depends_on("python")
|
||||
depends_on("cuda", type="build")
|
||||
Loading…
Reference in New Issue
Block a user