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r-affyrnadegradation: Create new package. (#5830)

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lingnanyuan 2017-10-24 04:13:53 -05:00 committed by Todd Gamblin
parent 2ede483149
commit cea33af464
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##############################################################################
# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RAffyrnadegradation(RPackage):
"""The package helps with the assessment and correction of
RNA degradation effects in Affymetrix 3' expression arrays.
The parameter d gives a robust and accurate measure of RNA
integrity. The correction removes the probe positional bias,
and thus improves comparability of samples that are affected
by RNA degradation."""
homepage = "https://www.bioconductor.org/packages/AffyRNADegradation/"
url = "https://git.bioconductor.org/packages/AffyRNADegradation"
version('1.22.0', git='https://git.bioconductor.org/packages/AffyRNADegradation', commit='0fa78f8286494711a239ded0ba587b0de47c15d3')
depends_on('r@3.4.0:3.4.9', when='@1.22.0')
depends_on('r-affy', type=('build', 'run'))