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New package allpaths-lg (#4632)

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* allpathslg: adding package. compiler specs iffy, will fix

* allpaths-lg: adding new package

* allpaths-lg: fixing conflicts
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Audrey Thoma 2017-06-28 14:14:12 -05:00 committed by Adam J. Stewart
parent 6550aeeafc
commit d354289b9c
1 changed files with 45 additions and 0 deletions
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var/spack/repos/builtin/packages/allpaths-lg/package.py Normal file
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##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class AllpathsLg(AutotoolsPackage):
"""ALLPATHS-LG is our original short read assembler and it works on both
small and large (mammalian size) genomes."""
homepage = "http://www.broadinstitute.org/software/allpaths-lg/blog/"
url = "ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/LATEST_VERSION.tar.gz"
version('52488', 'bde9008e236d87708a48eb83af6d6d5b')
# compiles with gcc 4.7.0 to 4.9.4)
conflicts('%gcc@:4.6.4,5.1.0:')
conflicts('%cce')
conflicts('%clang')
conflicts('%intel')
conflicts('%nag')
conflicts('%pgi')
conflicts('%xl')
conflicts('%xl_r')