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angsd: add 0.933, add misc programs to install (#16669)

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* angsd: add 0.933, add misc programs to install

* angsd: add r variant
This commit is contained in:
Justin S 2020-05-18 16:07:35 -05:00 committed by GitHub
parent 154a442817
commit d768b34f17
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1 changed files with 17 additions and 1 deletions
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18
var/spack/repos/builtin/packages/angsd/package.py
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@ -16,18 +16,34 @@ class Angsd(MakefilePackage):
homepage = "https://github.com/ANGSD/angsd"
url = "https://github.com/ANGSD/angsd/archive/0.919.tar.gz"
version('0.933', sha256='2f992325dc08fa25ac525d9300ef6bd61808e74c521b4cc72a2ce00d98f402bb')
version('0.921', sha256='8892d279ce1804f9e17fe2fc65a47e5498e78fc1c1cb84d2ca2527fd5c198772')
version('0.919', sha256='c2ea718ca5a5427109f4c3415e963dcb4da9afa1b856034e25c59c003d21822a')
variant('r', default=True, description='Enable R dependency')
depends_on('htslib')
conflicts('^htslib@1.6:', when='@0.919')
depends_on('zlib')
depends_on('lzma')
depends_on('curl')
depends_on('r', type='run', when='+rlib')
def setup_run_environment(self, env):
env.set('R_LIBS', self.prefix.R)
def install(self, spec, prefix):
binaries = [
'angsd', 'misc/realSFS', 'misc/thetaStat'
]
mkdirp(prefix.bin)
install('angsd', join_path(prefix.bin))
for b in binaries:
install(b, join_path(prefix.bin))
install_tree('R', prefix.R)
install_tree('RES', prefix.RES)
install_tree('scripts', prefix.scripts)