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Merge pull request #380 from epfl-scitas/packages/mumps

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Adding packages MUMPS and ScaLAPACK
This commit is contained in:
Todd Gamblin
2016-01-21 01:58:57 -08:00
parent 1c2a2dde8e b71b478a36
commit dab65e4ba6
3 changed files with 227 additions and 0 deletions
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38
var/spack/repos/builtin/packages/mumps/Makefile.inc Normal file
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LPORDDIR = $(topdir)/PORD/lib/
IPORD = -I$(topdir)/PORD/include/
LPORD = -L$(LPORDDIR) -lpord
ORDERINGSC = $(ORDERINGSF)
LORDERINGS = $(LMETIS) $(LPORD) $(LSCOTCH)
IORDERINGSF = $(ISCOTCH)
IORDERINGSC = $(IMETIS) $(IPORD) $(ISCOTCH)
PLAT =
LIBEXT = .a
OUTC = -o
OUTF = -o
RM = /bin/rm -f
AR = ar vr
RANLIB = ranlib
INCSEQ = -I$(topdir)/libseq
LIBSEQ = -L$(topdir)/libseq -lmpiseq
INCPAR =
LIBPAR = $(SCALAP)
LIBOTHERS = -lpthread
#Sequential:
ifeq ($(MUMPS_TYPE),seq)
INCS = $(INCSEQ)
LIBS = $(LIBSEQ)
LIBSEQNEEDED = libseqneeded
endif
#Parallel:
ifeq ($(MUMPS_TYPE),par)
INCS = $(INCPAR)
LIBS = $(LIBPAR)
LIBSEQNEEDED =
endif

139
var/spack/repos/builtin/packages/mumps/package.py Normal file
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from spack import *
import os
class Mumps(Package):
"""MUMPS: a MUltifrontal Massively Parallel sparse direct Solver"""
homepage = "http://mumps.enseeiht.fr"
url = "http://mumps.enseeiht.fr/MUMPS_5.0.1.tar.gz"
version('5.0.1', 'b477573fdcc87babe861f62316833db0')
variant('mpi', default=True, description='Activate the compilation of MUMPS with the MPI support')
variant('scotch', default=False, description='Activate Scotch as a possible ordering library')
variant('ptscotch', default=False, description='Activate PT-Scotch as a possible ordering library')
variant('metis', default=False, description='Activate Metis as a possible ordering library')
variant('parmetis', default=False, description='Activate Parmetis as a possible ordering library')
variant('double', default=True, description='Activate the compilation of dmumps')
variant('float', default=True, description='Activate the compilation of smumps')
variant('complex', default=True, description='Activate the compilation of cmumps and/or zmumps')
variant('idx64', default=False, description='Use int64_t/integer*8 as default index type')
depends_on('scotch + esmumps', when='~ptscotch+scotch')
depends_on('scotch + esmumps + mpi', when='+ptscotch')
depends_on('metis', when='~parmetis+metis')
depends_on('parmetis', when="+parmetis")
depends_on('blas')
depends_on('lapack')
depends_on('scalapack', when='+mpi')
depends_on('mpi', when='+mpi')
# this function is not a patch function because in case scalapack
# is needed it uses self.spec['scalapack'].fc_link set by the
# setup_dependent_environment in scalapck. This happen after patch
# end before install
# def patch(self):
def write_makefile_inc(self):
if ('+parmetis' in self.spec or '+ptscotch' in self.spec) and '+mpi' not in self.spec:
raise RuntimeError('You cannot use the variants parmetis or ptscotch without mpi')
makefile_conf = ["LIBBLAS = -L%s -lblas" % self.spec['blas'].prefix.lib]
orderings = ['-Dpord']
if '+ptscotch' in self.spec or '+scotch' in self.spec:
join_lib = ' -l%s' % ('pt' if '+ptscotch' in self.spec else '')
makefile_conf.extend(
["ISCOTCH = -I%s" % self.spec['scotch'].prefix.include,
"LSCOTCH = -L%s %s%s" % (self.spec['scotch'].prefix.lib,
join_lib,
join_lib.join(['esmumps', 'scotch', 'scotcherr']))])
orderings.append('-Dscotch')
if '+ptscotch' in self.spec:
orderings.append('-Dptscotch')
if '+parmetis' in self.spec or '+metis' in self.spec:
libname = 'parmetis' if '+parmetis' in self.spec else 'metis'
makefile_conf.extend(
["IMETIS = -I%s" % self.spec[libname].prefix.include,
"LMETIS = -L%s -l%s" % (self.spec[libname].prefix.lib, libname)])
orderings.append('-Dmetis')
if '+parmetis' in self.spec:
orderings.append('-Dparmetis')
makefile_conf.append("ORDERINGSF = %s" % (' '.join(orderings)))
# TODO: test this part, it needs a full blas, scalapack and
# partitionning environment with 64bit integers
if '+idx64' in self.spec:
makefile_conf.extend(
# the fortran compilation flags most probably are
# working only for intel and gnu compilers this is
# perhaps something the compiler should provide
['OPTF = -O -DALLOW_NON_INIT %s' % '-fdefault-integer-8' if self.compiler.name == "gcc" else '-i8',
'OPTL = -O ',
'OPTC = -O -DINTSIZE64'])
else:
makefile_conf.extend(
['OPTF = -O -DALLOW_NON_INIT',
'OPTL = -O ',
'OPTC = -O '])
if '+mpi' in self.spec:
makefile_conf.extend(
["CC = %s" % join_path(self.spec['mpi'].prefix.bin, 'mpicc'),
"FC = %s" % join_path(self.spec['mpi'].prefix.bin, 'mpif90'),
"FL = %s" % join_path(self.spec['mpi'].prefix.bin, 'mpif90'),
"SCALAP = %s" % self.spec['scalapack'].fc_link,
"MUMPS_TYPE = par"])
else:
makefile_conf.extend(
["CC = cc",
"FC = fc",
"FL = fc",
"MUMPS_TYPE = seq"])
# TODO: change the value to the correct one according to the
# compiler possible values are -DAdd_, -DAdd__ and/or -DUPPER
makefile_conf.append("CDEFS = -DAdd_")
makefile_inc_template = join_path(os.path.dirname(self.module.__file__),
'Makefile.inc')
with open(makefile_inc_template, "r") as fh:
makefile_conf.extend(fh.read().split('\n'))
with working_dir('.'):
with open("Makefile.inc", "w") as fh:
makefile_inc = '\n'.join(makefile_conf)
fh.write(makefile_inc)
def install(self, spec, prefix):
make_libs = []
# the coice to compile ?examples is to have kind of a sanity
# check on the libraries generated.
if '+float' in spec:
make_libs.append('sexamples')
if '+complex' in spec:
make_libs.append('cexamples')
if '+double' in spec:
make_libs.append('dexamples')
if '+complex' in spec:
make_libs.append('zexamples')
self.write_makefile_inc()
make(*make_libs)
install_tree('lib', prefix.lib)
install_tree('include', prefix.include)
if '~mpi' in spec:
install('libseq/libmpiseq.a', prefix.lib)

50
var/spack/repos/builtin/packages/netlib-scalapack/package.py Normal file
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from spack import *
class NetlibScalapack(Package):
"""ScaLAPACK is a library of high-performance linear algebra routines for parallel distributed memory machines"""
homepage = "http://www.netlib.org/scalapack/"
url = "http://www.netlib.org/scalapack/scalapack-2.0.2.tgz"
version('2.0.2', '2f75e600a2ba155ed9ce974a1c4b536f')
version('2.0.1', '17b8cde589ea0423afe1ec43e7499161')
version('2.0.0', '9e76ae7b291be27faaad47cfc256cbfe')
# versions before 2.0.0 are not using cmake and requires blacs as
# a separated package
variant('shared', default=True, description='Build the shared library version')
variant('fpic', default=False, description="Build with -fpic compiler option")
provides('scalapack')
depends_on('mpi')
depends_on('lapack')
def install(self, spec, prefix):
options = [
"-DBUILD_SHARED_LIBS:BOOL=%s" % 'ON' if '+shared' in spec else 'OFF',
"-DBUILD_STATIC_LIBS:BOOL=%s" % 'OFF' if '+shared' in spec else 'ON',
"-DUSE_OPTIMIZED_LAPACK_BLAS:BOOL=ON", # forces scalapack to use find_package(LAPACK)
]
if '+fpic' in spec:
options.extend([
"-DCMAKE_C_FLAGS=-fPIC",
"-DCMAKE_Fortran_FLAGS=-fPIC"
])
options.extend(std_cmake_args)
with working_dir('spack-build', create=True):
cmake('..', *options)
make()
make("install")
def setup_dependent_environment(self, module, spec, dependent_spec):
# TODO treat OS that are not Linux...
lib_suffix = '.so' if '+shared' in spec['scalapack'] else '.a'
spec['scalapack'].fc_link = '-L%s -lscalapack' % spec['scalapack'].prefix.lib
spec['scalapack'].cc_link = spec['scalapack'].fc_link
spec['scalapack'].libraries = [join_path(spec['scalapack'].prefix.lib,
'libscalapack%s' % lib_suffix)]