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Preliminary RPackage class (#2761)

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This commit is contained in:
Adam J. Stewart
2017-01-07 18:28:52 -06:00
committed by Todd Gamblin
parent f379697985
commit daff3c0908
173 changed files with 238 additions and 1213 deletions
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26
var/spack/repos/builtin/packages/r-biocgenerics/package.py
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@@ -25,32 +25,16 @@
from spack import *
class RBiocgenerics(Package):
class RBiocgenerics(RPackage):
"""S4 generic functions needed by many Bioconductor packages."""
homepage = 'https://bioconductor.org/packages/BiocGenerics/'
version('bioc-3.3',
version('3.3',
git='https://github.com/Bioconductor-mirror/BiocGenerics.git',
branch='release-3.3')
version('bioc-3.2',
version('3.2',
git='https://github.com/Bioconductor-mirror/BiocGenerics.git',
branch='release-3.2')
extends('r')
def validate(self, spec):
"""
Checks that the version of R is appropriate for the Bioconductor
version.
"""
if spec.satisfies('@bioc-3.3'):
if not spec.satisfies('^R@3.3.0:3.3.9'):
raise InstallError('Must use R-3.3 for Bioconductor-3.3')
elif spec.satisfies('@bioc-3.2'):
if not spec.satisfies('^R@3.2.0:3.2.9'):
raise InstallError('Must use R-3.2 for Bioconductor-3.2')
def install(self, spec, prefix):
self.validate(spec)
R('CMD', 'INSTALL', '--library=%s' %
self.module.r_lib_dir, '%s' % self.stage.source_path)
depends_on('r@3.3.0:3.3.9', when='@3.3')
depends_on('r@3.2.0:3.2.9', when='@3.2')