poamsa: new package (#4808)

* poamsa: new package

* fixed version specs

var/spack/repos/builtin/packages/poamsa/package.py

@@ -0,0 +1,50 @@
+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Poamsa(MakefilePackage):
+    """POA is Partial Order Alignment, a fast program for multiple sequence
+       alignment in bioinformatics. Its advantages are speed, scalability,
+       sensitivity, and the superior ability to handle branching / indels
+       in the alignment."""
+
+    homepage = "https://sourceforge.net/projects/poamsa"
+    url      = "https://downloads.sourceforge.net/project/poamsa/poamsa/2.0/poaV2.tar.gz"
+
+    version('2.0', '9e2eb270d4867114406f53dab1311b2b')
+
+    def url_for_version(self, version):
+        url = "https://downloads.sourceforge.net/project/poamsa/poamsa/{0}/poaV{1}.tar.gz"
+        return url.format(version.dotted, version.up_to(1))
+
+    def build(self, spec, prefix):
+        make('poa')
+
+    def install(self, spec, prefix):
+        mkdirp(prefix.bin)
+        mkdirp(prefix.lib)
+        install('poa', prefix.bin)
+        install('liblpo.a', prefix.lib)