r-snpstats: new package at 1.34.0 (#14404)

var/spack/repos/builtin/packages/r-snpstats/package.py

@@ -0,0 +1,29 @@
+# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+
+
+class RSnpstats(RPackage):
+    """SnpMatrix and XSnpMatrix classes and methods.
+
+       Classes and statistical methods for large SNP association studies. This
+       extends the earlier snpMatrix package, allowing for uncertainty in
+       genotypes."""
+
+    homepage = "https://bioconductor.org/packages/snpStats"
+    git      = "https://git.bioconductor.org/packages/snpStats.git"
+
+    version('1.34.0', commit='e31cdfb18a9e12d70d6a3e8e6fbf7cf8faa3ea5b')
+    version('1.32.0', commit='7c31158183b4e39da6dc30c7da275acc36b2e32f')
+    version('1.30.0', commit='0dc1e4246f015feaf2579d60268b10ab5149ce09')
+    version('1.28.0', commit='8df9f4188f720dfbb4f4f4ec255cd2e22f3f4426')
+    version('1.26.0', commit='7c9b3304073e0556d694a8531882b349822fdda8')
+
+    depends_on('r@2.10.0:', type=('build', 'run'))
+    depends_on('r-survival', type=('build', 'run'))
+    depends_on('r-matrix', type=('build', 'run'))
+    depends_on('r-biocgenerics', type=('build', 'run'))
+    depends_on('r-zlibbioc', type=('build', 'run'))