From e858e4de17fe370b41e27822ad446b8b157c8491 Mon Sep 17 00:00:00 2001 From: lingnanyuan <1297162327@qq.com> Date: Tue, 3 Oct 2017 17:03:57 -0500 Subject: [PATCH] r-a4: new package. (#5577) --- .../repos/builtin/packages/r-a4/package.py | 40 +++++++++++++++++++ 1 file changed, 40 insertions(+) create mode 100644 var/spack/repos/builtin/packages/r-a4/package.py diff --git a/var/spack/repos/builtin/packages/r-a4/package.py b/var/spack/repos/builtin/packages/r-a4/package.py new file mode 100644 index 00000000000..0c6a1e588a4 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-a4/package.py @@ -0,0 +1,40 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RA4(RPackage): + """Automated Affymetrix Array Analysis Umbrella Package.""" + + homepage = "https://www.bioconductor.org/packages/a4/" + url = "https://www.bioconductor.org/packages/release/bioc/src/contrib/a4_1.24.0.tar.gz" + list_url = homepage + version('1.24.0', 'dfa17ec5b1914300360ff11f43955fdd') + + depends_on('r-a4base', type=('build', 'run')) + depends_on('r-a4preproc', type=('build', 'run')) + depends_on('r-a4classif', type=('build', 'run')) + depends_on('r-a4core', type=('build', 'run')) + depends_on('r-a4reporting', type=('build', 'run'))