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Add MET, METplus packages (#39238)

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* Add metplus package
* Add met package
* add metplus develop version
* copyright year var/spack/repos/builtin/packages/met/package.py
* copyright year var/spack/repos/builtin/packages/metplus/package.py

---------

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
This commit is contained in:
Alex Richert
2023-08-04 03:53:44 -07:00
committed by GitHub
parent 0b2098850c
commit ea256145d9
5 changed files with 277 additions and 0 deletions
Download Patch File Download Diff File Expand all files Collapse all files

11
var/spack/repos/builtin/packages/met/apple-clang-no-register.patch Normal file
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@@ -0,0 +1,11 @@
--- a/src/basic/vx_util/main.cc 2023-03-31 10:07:46
+++ b/src/basic/vx_util/main.cc 2023-06-02 16:26:38
@@ -157,7 +157,7 @@
void set_user_id() {
met_user_id = geteuid ();
- register struct passwd *pw;
+ struct passwd *pw;
pw = getpwuid (met_user_id);
if (pw) met_user_name = string(pw->pw_name);
}

20
var/spack/repos/builtin/packages/met/apple-clang-string-cast-operator.patch Normal file
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@@ -0,0 +1,20 @@
--- a/src/basic/vx_log/concat_string.h 2023-03-31 10:07:46
+++ b/src/basic/vx_log/concat_string.h 2023-06-02 16:26:06
@@ -146,7 +146,7 @@
void chomp(const char *); // removes trailing suffix, if possible
- operator const std::string () const;
+ operator std::string () const;
bool startswith(const char *) const;
bool endswith(const char *) const;
@@ -205,7 +205,7 @@
inline bool ConcatString::empty() const { return ( s ? s->empty() : true ); }
inline bool ConcatString::nonempty() const { return ( s ? !s->empty() : false ); }
-inline ConcatString::operator const std::string () const { return ( s ? *s : 0 ); }
+inline ConcatString::operator std::string () const { return ( s ? *s : 0 ); }
////////////////////////////////////////////////////////////////////////

11
var/spack/repos/builtin/packages/met/openmp_shape_patch.patch Normal file
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@@ -0,0 +1,11 @@
--- a/src/basic/vx_util/data_plane_util.cc 2022-03-18 22:29:42.000000000 -0400
+++ b/src/basic/vx_util/data_plane_util.cc 2022-03-18 22:30:44.000000000 -0400
@@ -253,7 +253,7 @@
#pragma omp parallel default(none) \
shared(mlog, dp, frac_dp, width, wrap_lon, t) \
- shared(use_climo, cmn, csd, vld_t, bad) \
+ shared(use_climo, cmn, csd, vld_t, bad, shape) \
private(x, y, n_vld, n_thr, gp, v)
{

172
var/spack/repos/builtin/packages/met/package.py Normal file
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@@ -0,0 +1,172 @@
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import os
from spack.package import *
class Met(AutotoolsPackage):
"""Statistical tool that matches up grids with either
gridded analyses or point observations and applies
configurable methods to compute statistics and diagnostics"""
homepage = "https://dtcenter.org/community-code/model-evaluation-tools-met"
url = "https://github.com/dtcenter/MET/archive/refs/tags/v11.0.1.tar.gz"
git = "https://github.com/dtcenter/MET"
maintainers("AlexanderRichert-NOAA")
version("develop", branch="develop")
version("11.0.2", sha256="f720d15e1d6c235c9a41fd97dbeb0eb1082fb8ae99e1bcdcb5e51be9b50bdfbf")
version("11.0.1", sha256="48d471ad4634f1b969d9358c51925ce36bf0a1cec5312a6755203a4794b81646")
version("11.0.0", sha256="648ebb54d07ca099680f4fc23b7ef5095c1a8ac5537c0a5d0e8587bf15991cff")
version("10.1.1", sha256="9827e65fbd1c64e776525bae072bc2d37d14465e85a952778dcc32a26d8b5c9e")
version("10.1.0", sha256="8d4c1fb2311d8481ffd24e30e407a1b1bc72a6add9658d76b9c323f1733db336")
version("10.0.1", sha256="8e965bb0eb8353229a730af511c5fa62bad9744606ab6a218d741d29eb5f3acd")
version("10.0.0", sha256="92f37c8bd83c951d86026cce294a16e4d3aa6dd41905629d0a729fa1bebe668a")
version("9.1.3", sha256="7356a5ad79ca961fd965cadd93a7bf6c73b3aa5fb1a01a932580b94e66d0d0c8")
variant("openmp", default=True, description="Use OpenMP multithreading")
variant("grib2", default=False, description="Enable compilation of utilities using GRIB2")
variant("python", default=False, description="Enable python embedding")
variant("lidar2nc", default=False, description="Enable compilation of lidar2nc")
variant("modis", default=False, description="Enable compilation of modis")
variant("graphics", default=False, description="Enable compilation of mode_graphics")
depends_on("gsl")
depends_on("bufr")
depends_on("zlib")
depends_on("netcdf-c")
depends_on("netcdf-cxx4")
depends_on("g2c", when="+grib2")
depends_on("hdf-eos2", when="+modis")
depends_on("hdf-eos2", when="+lidar2nc")
depends_on("hdf", when="+modis")
depends_on("hdf", when="+lidar2nc")
depends_on("cairo", when="+graphics")
depends_on("freetype", when="+graphics")
depends_on("python@3.6.3:", when="+python", type=("build", "run"))
depends_on("py-netcdf4", when="+python", type=("build", "run"))
depends_on("py-numpy", when="+python", type=("build", "run"))
depends_on("py-xarray", when="+python", type=("build", "run"))
depends_on("py-pandas", when="+python", type=("build", "run"))
patch("openmp_shape_patch.patch", when="@10.1.0")
# https://github.com/JCSDA/spack-stack/issues/615
# TODO(srherbener) Apple clang 14.x is getting pickier! When these updates are
# merged into the MET code base, the following two patches can be removed.
patch("apple-clang-string-cast-operator.patch", when="@10.1.1: %apple-clang@14:")
patch("apple-clang-no-register.patch", when="@10.1.1: %apple-clang@14:")
def url_for_version(self, version):
if version < Version("11"):
release_date = {
"10.1.1": "20220419",
"10.1.0": "20220314",
"10.0.1": "20211201",
"10.0.0": "20210510",
"9.1.3": "20210319",
}
url = "https://github.com/dtcenter/MET/releases/download/v{0}/met-{0}.{1}.tar.gz"
return url.format(version, release_date[str(version)])
else:
url = "https://github.com/dtcenter/MET/archive/refs/tags/v{0}.tar.gz"
return url.format(version)
def setup_build_environment(self, env):
spec = self.spec
cppflags = []
ldflags = []
libs = []
gsl = spec["gsl"]
env.set("MET_GSL", gsl.prefix)
netcdfcxx = spec["netcdf-cxx4"]
cppflags.append(netcdfcxx.libs.search_flags)
ldflags.append(netcdfcxx.libs.ld_flags)
libs.append(netcdfcxx.libs.link_flags)
netcdfc = spec["netcdf-c"]
if netcdfc.satisfies("+shared"):
cppflags.append("-I" + netcdfc.prefix.include)
ldflags.append("-L" + netcdfc.prefix.lib)
libs.append(netcdfc.libs.link_flags)
else:
nc_config = which(os.path.join(netcdfc.prefix.bin, "nc-config"))
cppflags.append(nc_config("--cflags", output=str).strip())
ldflags.append(nc_config("--libs", "--static", output=str).strip())
libs.append(nc_config("--libs", "--static", output=str).strip())
zlib = spec["zlib"]
cppflags.append("-D__64BIT__")
ldflags.append("-L" + zlib.prefix.lib)
libs.append("-lz")
bufr = spec["bufr"]
shared_bufr = True if "+shared" in bufr else False
bufr_libdir = find_libraries(
"libbufr_4", root=bufr.prefix, shared=shared_bufr, recursive=True
).directories[0]
env.set("BUFRLIB_NAME", "-lbufr_4")
env.set("MET_BUFRLIB", bufr_libdir)
if "+grib2" in spec:
g2c = spec["g2c"]
env.set("MET_GRIB2CLIB", g2c.libs.directories[0])
env.set("MET_GRIB2CINC", g2c.prefix.include)
env.set("GRIB2CLIB_NAME", "-lg2c")
if "+python" in spec:
python = spec["python"]
env.set("MET_PYTHON", python.command.path)
env.set("MET_PYTHON_CC", "-I" + python.headers.directories[0])
py_ld = [python.libs.ld_flags]
if spec["python"].satisfies("~shared"):
py_ld.append(spec["gettext"].libs.ld_flags)
py_ld.append(spec["gettext"].libs.ld_flags)
py_ld.append(spec["libiconv"].libs.ld_flags)
py_ld.append("-lutil")
env.set("MET_PYTHON_LD", " ".join(py_ld))
if "+lidar2nc" in spec or "+modis" in spec:
hdf = spec["hdf"]
hdfeos = spec["hdf-eos2"]
env.set("MET_HDF5", hdf.prefix)
env.set("MET_HDFEOS", hdfeos.prefix)
if "+graphics" in spec:
cairo = spec["cairo"]
freetype = spec["freetype"]
env.set("MET_CAIRO", cairo.prefix)
cppflags.append("-I" + cairo.prefix.include.cairo)
env.set("MET_FREETYPE", freetype.prefix)
env.set("CPPFLAGS", " ".join(cppflags))
env.set("LIBS", " ".join(libs))
env.set("LDFLAGS", " ".join(ldflags))
def configure_args(self):
args = []
args.extend(self.enable_or_disable("grib2"))
args.extend(self.enable_or_disable("python"))
args.extend(self.enable_or_disable("openmp"))
args.extend(self.enable_or_disable("lidar2nc"))
args.extend(self.enable_or_disable("modis"))
args.extend(self.enable_or_disable("mode_graphics", variant="graphics"))
if self.spec.satisfies("%apple-clang@14:"):
args.append("CXXFLAGS=-std=gnu++17")
return args
# def setup_run_environment(self, env):
# env.set('MET_BASE', self.prefix)

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var/spack/repos/builtin/packages/metplus/package.py Normal file
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# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Metplus(Package):
"""
METplus is a verification framework that spans a wide range of temporal
(warn-on-forecast to climate) and spatial (storm to global) scales.
"""
homepage = "https://dtcenter.org/community-code/metplus"
url = "https://github.com/dtcenter/METplus/archive/refs/tags/v4.1.0.tar.gz"
git = "https://github.com/dtcenter/METplus"
maintainers("AlexanderRichert-NOAA")
version("develop", branch="develop")
version("5.0.1", sha256="0e22b4f6791496551d99f68247d382b2af02c90b34c172a64c6f060e774bdced")
version("5.0.0", sha256="59d519bd062559b4cece9f8672e2e282b200057bc77e2e0937414003d8f2dd50")
version("4.1.4", sha256="6b8ac395f885807fcbeea07d814bbf97cec343566cb37bee088a3c5b65880ac7")
version("4.1.1", sha256="81c03474f57cef6c7196d65fba6427365fd761578d99804c6c367f21a29b8ced")
version("4.1.0", sha256="4e4d74be64c9c57b910824ebefff42eb3a9bb7e8e325d86b7a3f7fdd59d3e45d")
version("4.0.0", sha256="650c65b0cf1f1993209e69e469903c83fb4ae3c693060d8392fc1dece52493e2")
version("3.1.1", sha256="d137420c56b2736b09ab713300f25c16e1d6fe523d3f3e4d811471aed83b0d85")
variant("tcmpr_plotter", default=False, description="Enable TCMPRPlotter.")
variant("series_analysis", default=False, description="Enable CyclonePlotter wrapper.")
variant("cycloneplotter", default=False, description="Enable CyclonePlotter wrapper.")
variant("makeplots", default=False, description="Enable MakePlots Wrapper.")
variant("plotdataplane", default=False, description="Generate images from Postscript output.")
depends_on("met+python", type=("run"))
depends_on("py-python-dateutil", type=("run"))
depends_on("py-cartopy", when="+makeplots", type=("run"))
depends_on("py-matplotlib", when="+cycloneplotter", type=("run"))
depends_on("py-cartopy", when="+cycloneplotter", type=("run"))
depends_on("r", when="+tcmpr_plotter", type=("run"))
depends_on("imagemagick", when="+series_analysis", type=("run"))
depends_on("imagemagick", when="+plotdataplane", type=("run"))
def install(self, spec, prefix):
if spec.satisfies("@4.0.0:"):
conf = "defaults.conf"
else:
conf = "metplus_system.conf"
metplus_config = FileFilter(join_path("parm", "metplus_config", conf))
met_prefix = spec["met"].prefix
metplus_config.filter(
r"MET_INSTALL_DIR = /path/to", "MET_INSTALL_DIR = {}".format(met_prefix)
)
install_tree(self.stage.source_path, prefix)
def setup_run_environment(self, env):
env.prepend_path("PATH", self.prefix.ush)