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snap-korf: version update + fix for compilers newer than gcc5 (#28243)

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snehring 2022-01-04 18:44:04 -06:00 committed by GitHub
parent 431473ea9b
commit efc5d0a3b4
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1 changed files with 18 additions and 5 deletions
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23
var/spack/repos/builtin/packages/snap-korf/package.py
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@ -10,20 +10,33 @@ class SnapKorf(MakefilePackage):
homepage = "http://korflab.ucdavis.edu/software.html" homepage = "http://korflab.ucdavis.edu/software.html"
url = "http://korflab.ucdavis.edu/Software/snap-2013-11-29.tar.gz" url = "http://korflab.ucdavis.edu/Software/snap-2013-11-29.tar.gz"
git = "https://github.com/KorfLab/SNAP.git"
version('2021-11-04', commit='62ff3120fceccb03b5eea9d21afec3167dedfa94')
version('2013-11-29', sha256='e2a236392d718376356fa743aa49a987aeacd660c6979cee67121e23aeffc66a') version('2013-11-29', sha256='e2a236392d718376356fa743aa49a987aeacd660c6979cee67121e23aeffc66a')
depends_on('perl', type=('build', 'run')) depends_on('perl', type=('build', 'run'))
depends_on('boost')
depends_on('sqlite')
depends_on('sparsehash')
conflicts('%gcc@5:', when='@2013-11-29') def edit(self, spec, prefix):
if spec.satisfies('@2013-11-29%gcc@6:'):
rstr = '\\1 -Wno-tautological-compare -Wno-misleading-indentation'
filter_file('(-Werror)', rstr, 'Zoe/Makefile')
rstr = '\\1 -Wno-error=format-overflow -Wno-misleading-indentation'
filter_file('(-Werror)', rstr, 'Makefile')
filter_file(r'(^const char \* zoeFunction;)', 'extern \\1',
'Zoe/zoeTools.h')
filter_file(r'(^const char \* zoeConstructor;)', 'extern \\1',
'Zoe/zoeTools.h')
filter_file(r'(^const char \* zoeMethod;)', 'extern \\1',
'Zoe/zoeTools.h')
def install(self, spec, prefix): def install(self, spec, prefix):
mkdirp(prefix.bin) mkdirp(prefix.bin)
progs = ['snap', 'fathom', 'forge', 'depend', 'exonpairs', 'hmm-info'] progs = ['snap', 'fathom', 'forge']
if spec.satisfies('@2013-11-29'):
progs = progs + ['depend', 'exonpairs', 'hmm-info']
for p in progs: for p in progs:
install(p, prefix.bin) install(p, prefix.bin)