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Nextflow, Tower Agent, Tower CLI: updates (#34515)

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* renamed tower-agent and tower-cli with prefif nf-

* new nextflow package version

* added newest versions (today) for nf-tower-agent and nf-tower-cli
This commit is contained in:
Marco De La Pierre 2022-12-15 02:44:22 +08:00 committed by GitHub
parent 80e30222e1
commit f64cb29aea
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5 changed files with 150 additions and 1 deletions
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12
var/spack/repos/builtin/packages/nextflow/package.py
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@ -12,8 +12,18 @@ class Nextflow(Package):
homepage = "https://www.nextflow.io"
url = "https://github.com/nextflow-io/nextflow/releases/download/v21.04.3/nextflow"
maintainers = ["dialvarezs"]
maintainers = ["dialvarezs", "marcodelapierre"]
version(
"22.10.4",
sha256="612a085e183546688e0733ebf342fb73865f560ad1315d999354048fbca5954d",
expand=False,
)
version(
"22.10.3",
sha256="8d67046ca3b645fab2642d90848550a425c9905fd7dfc2b4753b8bcaccaa70dd",
expand=False,
)
version(
"22.10.1",
sha256="fa6b6faa8b213860212da413e77141a56a5e128662d21ea6603aeb9717817c4c",

44
var/spack/repos/builtin/packages/nf-tower-agent/package.py Normal file
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@ -0,0 +1,44 @@
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import platform
from spack.package import *
class NfTowerAgent(Package):
"""Tower Agent allows Nextflow Tower to launch pipelines
on HPC clusters that do not allow direct access through
an SSH client.
"""
homepage = "https://github.com/seqeralabs/tower-agent"
maintainers = ["marcodelapierre"]
if platform.machine() == "x86_64":
if platform.system() == "Linux":
version(
"0.5.0",
sha256="887f85aa9bb4688839c04b40887ce6446822ada7bdd858ec105cf44641ec8d2d",
url="https://github.com/seqeralabs/tower-agent/releases/download/v0.5.0/tw-agent-linux-x86_64",
expand=False,
)
version(
"0.4.5",
sha256="d3f38931ff769299b9f9f7e78d9f6a55f93914878c09117b8eaf5decd0c734ec",
url="https://github.com/seqeralabs/tower-agent/releases/download/v0.4.5/tw-agent-linux-x86_64",
expand=False,
)
version(
"0.4.3",
sha256="1125e64d4e3342e77fcf7f6827f045e421084654fe8faafd5389e356e0613cc0",
url="https://github.com/seqeralabs/tower-agent/releases/download/v0.4.3/tw-agent-linux-x86_64",
expand=False,
)
def install(self, spec, prefix):
mkdirp(prefix.bin)
install(self.stage.archive_file, join_path(prefix.bin, "tw-agent"))
set_executable(join_path(prefix.bin, "tw-agent"))

87
var/spack/repos/builtin/packages/nf-tower-cli/package.py Normal file
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@ -0,0 +1,87 @@
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import platform
from spack.package import *
class NfTowerCli(Package):
"""Tower on the Command Line brings Nextflow Tower concepts
including Pipelines, Actions and Compute Environments
to the terminal.
"""
homepage = "https://github.com/seqeralabs/tower-cli"
maintainers = ["marcodelapierre"]
if platform.machine() == "x86_64":
if platform.system() == "Darwin":
version(
"0.7.2",
sha256="b72093af9c8d61e0150eb9d56cedb67afc982d2432221ae0819aaa0c8826ff2b",
url="https://github.com/seqeralabs/tower-cli/releases/download/v0.7.2/tw-0.7.2-osx-x86_64",
expand=False,
)
version(
"0.7.1",
sha256="a4731d0d7f2c2d4219758126a8ee0b22a0a68464329d4be0a025ad7eb191e5c0",
url="https://github.com/seqeralabs/tower-cli/releases/download/v0.7.1/tw-0.7.1-osx-x86_64",
expand=False,
)
version(
"0.7.0",
sha256="b1b3ade4231de2c7303832bac406510c9de171d07d6384a54945903f5123f772",
url="https://github.com/seqeralabs/tower-cli/releases/download/v0.7.0/tw-0.7.0-osx-x86_64",
expand=False,
)
version(
"0.6.5",
sha256="8e7369611f3617bad3e76264d93fe467c6039c86af9f18e26142dee5df1e7346",
url="https://github.com/seqeralabs/tower-cli/releases/download/v0.6.5/tw-0.6.5-osx-x86_64",
expand=False,
)
version(
"0.6.2",
sha256="2bcc17687d58d4c888e8d57b7f2f769a2940afb3266dc3c6c48b0af0cb490d91",
url="https://github.com/seqeralabs/tower-cli/releases/download/v0.6.2/tw-0.6.2-osx-x86_64",
expand=False,
)
elif platform.system() == "Linux":
version(
"0.7.2",
sha256="a66d1655d2f3d83db160a890e6b3f20f4573978aa9e8ea5d6e505958a2980e72",
url="https://github.com/seqeralabs/tower-cli/releases/download/v0.7.2/tw-0.7.2-linux-x86_64",
expand=False,
)
version(
"0.7.1",
sha256="f3f8cf6b241f8935d4d90bd271809ca4cd7157ac476822483f458edbe54a1fa8",
url="https://github.com/seqeralabs/tower-cli/releases/download/v0.7.1/tw-0.7.1-linux-x86_64",
expand=False,
)
version(
"0.7.0",
sha256="651f564b80585c9060639f1a8fc82966f81becb0ab3e3ba34e53baf3baabff39",
url="https://github.com/seqeralabs/tower-cli/releases/download/v0.7.0/tw-0.7.0-linux-x86_64",
expand=False,
)
version(
"0.6.5",
sha256="0d1f3a6f53694000c1764bd3b40ce141f4b8923d477e2bdfdce75c66de95be00",
url="https://github.com/seqeralabs/tower-cli/releases/download/v0.6.5/tw-0.6.5-linux-x86_64",
expand=False,
)
version(
"0.6.2",
sha256="02c6d141416b046b6e8b6f9723331fe0e39d37faa3561c47c152df4d33b37e50",
url="https://github.com/seqeralabs/tower-cli/releases/download/v0.6.2/tw-0.6.2-linux-x86_64",
expand=False,
)
def install(self, spec, prefix):
mkdirp(prefix.bin)
install(self.stage.archive_file, join_path(prefix.bin, "tw"))
set_executable(join_path(prefix.bin, "tw"))

2
var/spack/repos/builtin/packages/tower-agent/package.py
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@ -22,12 +22,14 @@ class TowerAgent(Package):
version(
"0.4.5",
sha256="d3f38931ff769299b9f9f7e78d9f6a55f93914878c09117b8eaf5decd0c734ec",
deprecated=True,
url="https://github.com/seqeralabs/tower-agent/releases/download/v0.4.5/tw-agent-linux-x86_64",
expand=False,
)
version(
"0.4.3",
sha256="1125e64d4e3342e77fcf7f6827f045e421084654fe8faafd5389e356e0613cc0",
deprecated=True,
url="https://github.com/seqeralabs/tower-agent/releases/download/v0.4.3/tw-agent-linux-x86_64",
expand=False,
)

6
var/spack/repos/builtin/packages/tower-cli/package.py
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@ -22,18 +22,21 @@ class TowerCli(Package):
version(
"0.7.0",
sha256="b1b3ade4231de2c7303832bac406510c9de171d07d6384a54945903f5123f772",
deprecated=True,
url="https://github.com/seqeralabs/tower-cli/releases/download/v0.7.0/tw-0.7.0-osx-x86_64",
expand=False,
)
version(
"0.6.5",
sha256="8e7369611f3617bad3e76264d93fe467c6039c86af9f18e26142dee5df1e7346",
deprecated=True,
url="https://github.com/seqeralabs/tower-cli/releases/download/v0.6.5/tw-0.6.5-osx-x86_64",
expand=False,
)
version(
"0.6.2",
sha256="2bcc17687d58d4c888e8d57b7f2f769a2940afb3266dc3c6c48b0af0cb490d91",
deprecated=True,
url="https://github.com/seqeralabs/tower-cli/releases/download/v0.6.2/tw-0.6.2-osx-x86_64",
expand=False,
)
@ -41,18 +44,21 @@ class TowerCli(Package):
version(
"0.7.0",
sha256="651f564b80585c9060639f1a8fc82966f81becb0ab3e3ba34e53baf3baabff39",
deprecated=True,
url="https://github.com/seqeralabs/tower-cli/releases/download/v0.7.0/tw-0.7.0-linux-x86_64",
expand=False,
)
version(
"0.6.5",
sha256="0d1f3a6f53694000c1764bd3b40ce141f4b8923d477e2bdfdce75c66de95be00",
deprecated=True,
url="https://github.com/seqeralabs/tower-cli/releases/download/v0.6.5/tw-0.6.5-linux-x86_64",
expand=False,
)
version(
"0.6.2",
sha256="02c6d141416b046b6e8b6f9723331fe0e39d37faa3561c47c152df4d33b37e50",
deprecated=True,
url="https://github.com/seqeralabs/tower-cli/releases/download/v0.6.2/tw-0.6.2-linux-x86_64",
expand=False,
)