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IGV: new package (#6710)

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peetsv 2017-12-18 19:37:09 -08:00 committed by scheibelp
parent 0192455885
commit f7a5a27138
1 changed files with 54 additions and 0 deletions
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var/spack/repos/builtin/packages/igv/package.py Normal file
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##############################################################################
# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/spack/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
import glob
class Igv(Package):
"""The Integrative Genomics Viewer (IGV) is a high-performance
visualization tool for interactive exploration of large,
integrated genomic datasets."""
homepage = "http://software.broadinstitute.org/software/igv/"
version('2.4.5', '4c45e1b281d8e3d8630aa485c5df6949',
url='http://data.broadinstitute.org/igv/projects/downloads/2.4/IGVSource_2.4.5.zip')
version('2.3.50', '7fdb903a59d556fad25e668b38e860f8',
url='http://data.broadinstitute.org/igv/projects/downloads/2.3/IGVSource_2.3.50.zip')
depends_on('jdk@8:', type=('build', 'run'), when='@2.4:')
depends_on('jdk@7u0:7u999', type=('build', 'run'), when='@2.3:2.3.999')
depends_on('ant', type='build')
def install(self, spec, prefix):
ant = self.spec['ant'].command
ant('all')
mkdirp(prefix.bin)
install('igv.sh', prefix.bin)
install('igv.jar', prefix.bin)
mkdirp(prefix.lib)
files = [x for x in glob.glob("lib/*jar")]
for f in files:
install(f, prefix.lib)