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Update Package Creation Tutorial for PEARC19 (#12209)

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* Update Package Creation Tutorial for PEARC19

* A few remaining fixes

* Fix section link
This commit is contained in:
Adam J. Stewart 2019-07-31 12:54:09 -05:00 committed by GitHub
parent 65a1db87f8
commit f7d1df4d3a
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GPG Key ID: 4AEE18F83AFDEB23
8 changed files with 250 additions and 237 deletions
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4
lib/spack/docs/tutorial/examples/0.package.py
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@ -26,9 +26,9 @@ class Mpileaks(Package):
# FIXME: Add a proper url for your package's homepage here.
homepage = "http://www.example.com"
url = "https://github.com/hpc/mpileaks/releases/download/v1.0/mpileaks-1.0.tar.gz"
url = "https://github.com/LLNL/mpileaks/releases/download/v1.0/mpileaks-1.0.tar.gz"
version('1.0', '8838c574b39202a57d7c2d68692718aa')
version('1.0', sha256='2e34cc4505556d1c1f085758e26f2f8eea0972db9382f051b2dcfb1d7d9e1825')
# FIXME: Add dependencies if required.
# depends_on('foo')

7
lib/spack/docs/tutorial/examples/1.package.py
View File

@ -10,9 +10,10 @@ class Mpileaks(Package):
"""Tool to detect and report MPI objects like MPI_Requests and
MPI_Datatypes."""
homepage = "https://github.com/hpc/mpileaks"
url = "https://github.com/hpc/mpileaks/releases/download/v1.0/mpileaks-1.0.tar.gz" # NOQA
version('1.0', '8838c574b39202a57d7c2d68692718aa')
homepage = "https://github.com/LLNL/mpileaks"
url = "https://github.com/LLNL/mpileaks/releases/download/v1.0/mpileaks-1.0.tar.gz"
version('1.0', sha256='2e34cc4505556d1c1f085758e26f2f8eea0972db9382f051b2dcfb1d7d9e1825')
# FIXME: Add dependencies if required.
# depends_on('foo')

6
lib/spack/docs/tutorial/examples/2.package.py
View File

@ -10,10 +10,10 @@ class Mpileaks(Package):
"""Tool to detect and report MPI objects like MPI_Requests and
MPI_Datatypes."""
homepage = "https://github.com/hpc/mpileaks"
url = "https://github.com/hpc/mpileaks/releases/download/v1.0/mpileaks-1.0.tar.gz"
homepage = "https://github.com/LLNL/mpileaks"
url = "https://github.com/LLNL/mpileaks/releases/download/v1.0/mpileaks-1.0.tar.gz"
version('1.0', '8838c574b39202a57d7c2d68692718aa')
version('1.0', sha256='2e34cc4505556d1c1f085758e26f2f8eea0972db9382f051b2dcfb1d7d9e1825')
depends_on('mpi')
depends_on('adept-utils')

6
lib/spack/docs/tutorial/examples/3.package.py
View File

@ -10,10 +10,10 @@ class Mpileaks(Package):
"""Tool to detect and report MPI objects like MPI_Requests and
MPI_Datatypes."""
homepage = "https://github.com/hpc/mpileaks"
url = "https://github.com/hpc/mpileaks/releases/download/v1.0/mpileaks-1.0.tar.gz"
homepage = "https://github.com/LLNL/mpileaks"
url = "https://github.com/LLNL/mpileaks/releases/download/v1.0/mpileaks-1.0.tar.gz"
version('1.0', '8838c574b39202a57d7c2d68692718aa')
version('1.0', sha256='2e34cc4505556d1c1f085758e26f2f8eea0972db9382f051b2dcfb1d7d9e1825')
depends_on('mpi')
depends_on('adept-utils')

12
lib/spack/docs/tutorial/examples/4.package.py
View File

@ -10,18 +10,18 @@ class Mpileaks(Package):
"""Tool to detect and report MPI objects like MPI_Requests and
MPI_Datatypes."""
homepage = "https://github.com/hpc/mpileaks"
url = "https://github.com/hpc/mpileaks/releases/download/v1.0/mpileaks-1.0.tar.gz"
homepage = "https://github.com/LLNL/mpileaks"
url = "https://github.com/LLNL/mpileaks/releases/download/v1.0/mpileaks-1.0.tar.gz"
version('1.0', '8838c574b39202a57d7c2d68692718aa')
version('1.0', sha256='2e34cc4505556d1c1f085758e26f2f8eea0972db9382f051b2dcfb1d7d9e1825')
depends_on('mpi')
depends_on('adept-utils')
depends_on('callpath')
def install(self, spec, prefix):
configure('--with-adept-utils=%s' % self.spec['adept-utils'].prefix,
'--with-callpath=%s' % self.spec['callpath'].prefix,
'--prefix=%s' % self.spec.prefix)
configure('--prefix={0}'.format(prefix),
'--with-adept-utils={0}'.format(spec['adept-utils'].prefix),
'--with-callpath={0}'.format(spec['callpath'].prefix))
make()
make('install')

30
lib/spack/docs/tutorial/examples/5.package.py
View File

@ -10,25 +10,33 @@ class Mpileaks(Package):
"""Tool to detect and report MPI objects like MPI_Requests and
MPI_Datatypes."""
homepage = "https://github.com/hpc/mpileaks"
url = "https://github.com/hpc/mpileaks/releases/download/v1.0/mpileaks-1.0.tar.gz"
homepage = "https://github.com/LLNL/mpileaks"
url = "https://github.com/LLNL/mpileaks/releases/download/v1.0/mpileaks-1.0.tar.gz"
version('1.0', '8838c574b39202a57d7c2d68692718aa')
version('1.0', sha256='2e34cc4505556d1c1f085758e26f2f8eea0972db9382f051b2dcfb1d7d9e1825')
variant('stackstart', values=int, default=0, description='Specify the number of stack frames to truncate.')
variant('stackstart', values=int, default=0,
description='Specify the number of stack frames to truncate')
depends_on('mpi')
depends_on('adept-utils')
depends_on('callpath')
def install(self, spec, prefix):
stackstart = int(self.spec.variants['stackstart'].value)
confargs = ['--with-adept-utils=%s' % self.spec['adept-utils'].prefix,
'--with-callpath=%s' % self.spec['callpath'].prefix,
'--prefix=%s' % self.spec.prefix]
stackstart = int(spec.variants['stackstart'].value)
args = [
'--prefix={0}'.format(prefix),
'--with-adept-utils={0}'.format(spec['adept-utils'].prefix),
'--with-callpath={0}'.format(spec['callpath'].prefix),
]
if stackstart:
confargs.extend(['--with-stack-start-c=%s' % stackstart,
'--with-stack-start-fortran=%s' % stackstart])
configure(*confargs)
args.extend([
'--with-stack-start-c={0}'.format(stackstart),
'--with-stack-start-fortran={0}'.format(stackstart)
])
configure(*args)
make()
make('install')

389
lib/spack/docs/tutorial_packaging.rst
View File

@ -10,8 +10,8 @@ Package Creation Tutorial
=========================
This tutorial will walk you through the steps behind building a simple
package installation script. We'll focus building an mpileaks package,
which is a MPI debugging tool. By creating a package file we're
package installation script. We'll focus on writing a package for
mpileaks, an MPI debugging tool. By creating a package file we're
essentially giving Spack a recipe for how to build a particular piece of
software. We're describing some of the software's dependencies, where to
find the package, what commands and options are used to build the package
@ -20,7 +20,7 @@ ask Spack to build that package in many different ways.
This tutorial assumes you have a basic familiarity with some of the Spack
commands, and that you have a working version of Spack installed. If
not, we suggest looking at Spack's *Getting Started* guide. This
not, we suggest looking at Spack's :ref:`getting_started` guide. This
tutorial also assumes you have at least a beginner's-level familiarity
with Python.
@ -38,8 +38,8 @@ A few things before we get started:
variable ``SPACK_ROOT``. You should point ``SPACK_ROOT`` at wherever
you have Spack installed.
- Add ``$SPACK_ROOT/bin`` to your ``PATH`` before you start.
- Make sure your ``EDITOR`` environment variable is set to some text
editor you like.
- Make sure your ``EDITOR`` environment variable is set to your
preferred text editor.
- We'll be writing Python code as part of this tutorial. You can find
successive versions of the Python code in
``$SPACK_ROOT/lib/spack/docs/tutorial/examples``.
@ -55,8 +55,8 @@ with Spack to avoid breaking the builtin Spack packages.
.. code-block:: console
$ spack repo add $SPACK_ROOT/var/spack/repos/tutorial/
==> Added repo with namespace 'tutorial'.
$ spack repo add $SPACK_ROOT/var/spack/repos/tutorial/
==> Added repo with namespace 'tutorial'.
Spack comes with a handy command to create a new package: ``spack create``.
@ -67,28 +67,28 @@ we run ``spack create`` on it:
.. code-block:: console
$ spack create -t generic -f https://github.com/hpc/mpileaks/releases/download/v1.0/mpileaks-1.0.tar.gz
==> This looks like a URL for mpileaks
==> Found 1 version of mpileaks:
$ spack create -t generic https://github.com/LLNL/mpileaks/releases/download/v1.0/mpileaks-1.0.tar.gz
==> This looks like a URL for mpileaks
==> Found 1 version of mpileaks:
1.0 https://github.com/LLNL/mpileaks/releases/download/v1.0/mpileaks-1.0.tar.gz
1.0 https://github.com/LLNL/mpileaks/releases/download/v1.0/mpileaks-1.0.tar.gz
==> How many would you like to checksum? (default is 1, q to abort) 1
==> Downloading...
==> Fetching https://github.com/LLNL/mpileaks/releases/download/v1.0/mpileaks-1.0.tar.gz
############################################################################# 100.0%
==> Checksummed 1 version of mpileaks
==> Using specified package template: 'generic'
==> Created template for mpileaks package
==> Created package file: /home/spack1/spack/var/spack/repos/builtin/packages/mpileaks/package.py
==> How many would you like to checksum? (default is 1, q to abort) 1
==> Downloading...
==> Fetching https://github.com/LLNL/mpileaks/releases/download/v1.0/mpileaks-1.0.tar.gz
############################################################################# 100.0%
==> Checksummed 1 version of mpileaks
==> Using specified package template: 'generic'
==> Created template for mpileaks package
==> Created package file: ~/spack/var/spack/repos/tutorial/packages/mpileaks/package.py
And Spack should spawn a text editor with this file:
Spack should spawn a text editor with this file:
.. literalinclude:: tutorial/examples/0.package.py
:language: python
Spack has created this file in
``/home/spack1/spack/var/spack/repos/builtin/packages/mpileaks/package.py``. Take a
``$SPACK_ROOT/var/spack/repos/tutorial/packages/mpileaks/package.py``. Take a
moment to look over the file. There's a few placeholders that Spack has
created, which we'll fill in as part of this tutorial:
@ -102,33 +102,33 @@ to build this package:
.. code-block:: console
$ spack install mpileaks
==> No binary for mpileaks found: installing from source
==> Fetching file:///mirror/mpileaks/mpileaks-1.0.tar.gz
curl: (37) Couldn't open file /mirror/mpileaks/mpileaks-1.0.tar.gz
==> Fetching from file:///mirror/mpileaks/mpileaks-1.0.tar.gz failed.
==> Fetching https://github.com/hpc/mpileaks/releases/download/v1.0/mpileaks-1.0.tar.gz
######################################################################## 100.0%
==> Staging archive: /home/ubuntu/packaging/spack/var/spack/stage/mpileaks-1.0-sv75n3u5ev6mljwcezisz3slooozbbxu/mpileaks-1.0.tar.gz
==> Created stage in /home/ubuntu/packaging/spack/var/spack/stage/mpileaks-1.0-sv75n3u5ev6mljwcezisz3slooozbbxu
==> No patches needed for mpileaks
==> Building mpileaks [Package]
==> Executing phase: 'install'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16'
$ spack install mpileaks
==> Installing mpileaks
==> Searching for binary cache of mpileaks
==> Warning: No Spack mirrors are currently configured
==> No binary for mpileaks found: installing from source
==> Fetching https://github.com/LLNL/mpileaks/releases/download/v1.0/mpileaks-1.0.tar.gz
############################################################################# 100.0%
==> Staging archive: ~/spack/var/spack/stage/mpileaks-1.0-sv75n3u5ev6mljwcezisz3slooozbbxu/mpileaks-1.0.tar.gz
==> Created stage in ~/spack/var/spack/stage/mpileaks-1.0-sv75n3u5ev6mljwcezisz3slooozbbxu
==> No patches needed for mpileaks
==> Building mpileaks [Package]
==> Executing phase: 'install'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16'
1 error found in build log:
1 ==> Executing phase: 'install'
2 ==> 'make' '-j16'
>> 3 make: *** No targets specified and no makefile found. Stop.
1 error found in build log:
1 ==> Executing phase: 'install'
2 ==> 'make' '-j16'
>> 3 make: *** No targets specified and no makefile found. Stop.
See build log for details:
/home/ubuntu/packaging/spack/var/spack/stage/mpileaks-1.0-sv75n3u5ev6mljwcezisz3slooozbbxu/mpileaks-1.0/spack-build-out.txt
See build log for details:
~/spack/var/spack/stage/mpileaks-1.0-sv75n3u5ev6mljwcezisz3slooozbbxu/spack-build-out.txt
This obviously didn't work; we need to fill in the package-specific
information. Specifically, Spack didn't try to build any of mpileaks'
dependencies, nor did it use the proper configure arguments. Let's start
fixing things
fixing things.
---------------------
Package Documentation
@ -139,60 +139,60 @@ We can bring the ``package.py`` file back into our ``EDITOR`` with the
.. code-block:: console
$ spack edit mpileaks
$ spack edit mpileaks
Let's remove some of the ``FIXME`` comments, and add links to the mpileaks
homepage and document what mpileaks does. I'm also going to cut out the
Let's remove some of the ``FIXME`` comments, add links to the mpileaks
homepage, and document what mpileaks does. I'm also going to cut out the
Copyright clause at this point to keep this tutorial document shorter,
but you shouldn't do that normally. The results of these changes can be
found in ``$SPACK_ROOT/lib/spack/docs/tutorial/examples/1.package.py``
and are below. Make these changes to your ``package.py``:
and are displayed below. Make these changes to your ``package.py``:
.. literalinclude:: tutorial/examples/1.package.py
:lines: 6-
:language: python
We've filled in the comment that describes what this package does and
added a link to the web site. That won't help us build yet, but it will
added a link to its website. That won't help us build yet, but it will
allow Spack to provide some documentation on this package to other users:
.. code-block:: console
$ spack info mpileaks
Package: mpileaks
$ spack info mpileaks
Package: mpileaks
Description:
Tool to detect and report MPI objects like MPI_Requests and
MPI_Datatypes.
Description:
Tool to detect and report MPI objects like MPI_Requests and
MPI_Datatypes.
Homepage: https://github.com/hpc/mpileaks
Homepage: https://github.com/LLNL/mpileaks
Tags:
None
Tags:
None
Preferred version:
1.0 https://github.com/hpc/mpileaks/releases/download/v1.0/mpileaks-1.0.tar.gz
Preferred version:
1.0 https://github.com/LLNL/mpileaks/releases/download/v1.0/mpileaks-1.0.tar.gz
Safe versions:
1.0 https://github.com/hpc/mpileaks/releases/download/v1.0/mpileaks-1.0.tar.gz
Safe versions:
1.0 https://github.com/LLNL/mpileaks/releases/download/v1.0/mpileaks-1.0.tar.gz
Variants:
None
Variants:
None
Installation Phases:
install
Installation Phases:
install
Build Dependencies:
None
Build Dependencies:
None
Link Dependencies:
None
Link Dependencies:
None
Run Dependencies:
None
Run Dependencies:
None
Virtual Packages:
None
Virtual Packages:
None
As we fill in more information about this package the ``spack info`` command
will become more informative. Now let's start making this package build.
@ -201,7 +201,7 @@ will become more informative. Now let's start making this package build.
Dependencies
------------
The mpileaks packages depends on three other package: ``MPI``,
The mpileaks package depends on three other packages: ``mpi``,
``adept-utils``, and ``callpath``. Let's add those via the
``depends_on`` command in our ``package.py`` (this version is in
``$SPACK_ROOT/lib/spack/docs/tutorial/examples/2.package.py``):
@ -213,50 +213,45 @@ The mpileaks packages depends on three other package: ``MPI``,
Now when we go to build mpileaks, Spack will fetch and build these
dependencies before building mpileaks. Note that the mpi dependency is a
different kind of beast than the adept-utils and callpath dependencies;
there is no mpi package available in Spack. Instead mpi is a virtual
dependency. Spack may satisfy that dependency by installing packages
such as ``openmpi`` or ``mvapich``. See the :ref:`packaging-guide` for more
there is no mpi package available in Spack. Instead mpi is a *virtual
dependency*. Spack may satisfy that dependency by installing packages
such as ``openmpi`` or ``mvapich2``. See the :ref:`packaging-guide` for more
information on virtual dependencies.
Now when we try to install this package a lot more happens:
Now when we try to install this package, a lot more happens:
.. code-block:: console
$ spack install mpileaks
...
==> Successfully installed libdwarf from binary cache
[+] /home/ubuntu/packaging/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libdwarf-20180129-p4jeflorwlnkoq2vpuyocwrbcht2ayak
==> Installing callpath
==> Searching for binary cache of callpath
==> Installing callpath from binary cache
==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/callpath-1.0.4/linux-ubuntu16.04-x86_64-gcc-5.4.0-callpath-1.0.4-empvyxdkc4j4pwg7gznwhbiumruey66x.spack
######################################################################## 100.0%
gpg: Signature made Sat 10 Nov 2018 05:30:21 AM UTC using RSA key ID 3B7C69B2
gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
gpg: WARNING: This key is not certified with a trusted signature!
gpg: There is no indication that the signature belongs to the owner.
Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
==> Successfully installed callpath from binary cache
[+] /home/ubuntu/packaging/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/callpath-1.0.4-empvyxdkc4j4pwg7gznwhbiumruey66x
==> Installing mpileaks
==> Searching for binary cache of mpileaks
==> No binary for mpileaks found: installing from source
==> Using cached archive: /home/ubuntu/packaging/spack/var/spack/cache/mpileaks/mpileaks-1.0.tar.gz
==> Staging archive: /home/ubuntu/packaging/spack/var/spack/stage/mpileaks-1.0-csoikctsalli4cdkkdk377gprkc472rb/mpileaks-1.0.tar.gz
==> Created stage in /home/ubuntu/packaging/spack/var/spack/stage/mpileaks-1.0-csoikctsalli4cdkkdk377gprkc472rb
==> No patches needed for mpileaks
==> Building mpileaks [Package]
==> Executing phase: 'install'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16'
$ spack install mpileaks
...
==> Successfully installed libdwarf from binary cache
[+] ~/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libdwarf-20180129-p4jeflorwlnkoq2vpuyocwrbcht2ayak
==> Installing callpath
==> Searching for binary cache of callpath
==> Installing callpath from binary cache
==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/callpath-1.0.4/linux-ubuntu16.04-x86_64-gcc-5.4.0-callpath-1.0.4-empvyxdkc4j4pwg7gznwhbiumruey66x.spack
######################################################################## 100.0%
==> Successfully installed callpath from binary cache
[+] ~/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/callpath-1.0.4-empvyxdkc4j4pwg7gznwhbiumruey66x
==> Installing mpileaks
==> Searching for binary cache of mpileaks
==> No binary for mpileaks found: installing from source
==> Using cached archive: ~/spack/var/spack/cache/mpileaks/mpileaks-1.0.tar.gz
==> Staging archive: ~/spack/var/spack/stage/mpileaks-1.0-csoikctsalli4cdkkdk377gprkc472rb/mpileaks-1.0.tar.gz
==> Created stage in ~/spack/var/spack/stage/mpileaks-1.0-csoikctsalli4cdkkdk377gprkc472rb
==> No patches needed for mpileaks
==> Building mpileaks [Package]
==> Executing phase: 'install'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16'
1 error found in build log:
1 ==> Executing phase: 'install'
2 ==> 'make' '-j16'
>> 3 make: *** No targets specified and no makefile found. Stop.
1 error found in build log:
1 ==> Executing phase: 'install'
2 ==> 'make' '-j16'
>> 3 make: *** No targets specified and no makefile found. Stop.
See build log for details:
/home/ubuntu/packaging/spack/var/spack/stage/mpileaks-1.0-csoikctsalli4cdkkdk377gprkc472rb/mpileaks-1.0/spack-build-out.txt
See build log for details:
~/spack/var/spack/stage/mpileaks-1.0-csoikctsalli4cdkkdk377gprkc472rb/mpileaks-1.0/spack-build-out.txt
Note that this command may take a while to run and produce more output if
you don't have an MPI already installed or configured in Spack.
@ -273,7 +268,7 @@ Debugging Package Builds
Our ``mpileaks`` package is still not building. It may be obvious to
many of you that we never ran the configure script. Let's add a
call to ``configure()`` to the top of the install routine. The resulting
package.py is in ``$SPACK_ROOT/lib/spack/docs/tutorial/examples/3.package.py``:
``package.py`` is in ``$SPACK_ROOT/lib/spack/docs/tutorial/examples/3.package.py``:
.. literalinclude:: tutorial/examples/3.package.py
:lines: 6-
@ -283,46 +278,41 @@ If we re-run we still get errors:
.. code-block:: console
$ spack install mpileask
...
==> Installing mpileaks
==> Searching for binary cache of mpileaks
==> Finding buildcaches in /mirror/build_cache
==> No binary for mpileaks found: installing from source
==> Using cached archive: /home/ubuntu/packaging/spack/var/spack/cache/mpileaks/mpileaks-1.0.tar.gz
==> Staging archive: /home/ubuntu/packaging/spack/var/spack/stage/mpileaks-1.0-csoikctsalli4cdkkdk377gprkc472rb/mpileaks-1.0.tar.gz
==> Created stage in /home/ubuntu/packaging/spack/var/spack/stage/mpileaks-1.0-csoikctsalli4cdkkdk377gprkc472rb
==> No patches needed for mpileaks
==> Building mpileaks [Package]
==> Executing phase: 'install'
==> Error: ProcessError: Command exited with status 1:
'./configure'
$ spack install mpileaks
...
==> Installing mpileaks
==> Searching for binary cache of mpileaks
==> Finding buildcaches in /mirror/build_cache
==> No binary for mpileaks found: installing from source
==> Using cached archive: ~/spack/var/spack/cache/mpileaks/mpileaks-1.0.tar.gz
==> Staging archive: ~/spack/var/spack/stage/mpileaks-1.0-csoikctsalli4cdkkdk377gprkc472rb/mpileaks-1.0.tar.gz
==> Created stage in ~/spack/var/spack/stage/mpileaks-1.0-csoikctsalli4cdkkdk377gprkc472rb
==> No patches needed for mpileaks
==> Building mpileaks [Package]
==> Executing phase: 'install'
==> Error: ProcessError: Command exited with status 1:
'./configure'
1 error found in build log:
25 checking for /home/ubuntu/packaging/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-
5.4.0/openmpi-3.1.3-3njc4q5pqdpptq6jvqjrezkffwokv2sx/bin/mpicc... /home/ubuntu/pa
ckaging/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/openmpi-3.1.3-3njc4q5p
qdpptq6jvqjrezkffwokv2sx/bin/mpicc
26 Checking whether /home/ubuntu/packaging/spack/opt/spack/linux-ubuntu16.04-x86_64/
gcc-5.4.0/openmpi-3.1.3-3njc4q5pqdpptq6jvqjrezkffwokv2sx/bin/mpicc responds to '-
showme:compile'... no
27 Checking whether /home/ubuntu/packaging/spack/opt/spack/linux-ubuntu16.04-x86_64/
gcc-5.4.0/openmpi-3.1.3-3njc4q5pqdpptq6jvqjrezkffwokv2sx/bin/mpicc responds to '-
showme'... no
28 Checking whether /home/ubuntu/packaging/spack/opt/spack/linux-ubuntu16.04-x86_64/
gcc-5.4.0/openmpi-3.1.3-3njc4q5pqdpptq6jvqjrezkffwokv2sx/bin/mpicc responds to '-
compile-info'... no
29 Checking whether /home/ubuntu/packaging/spack/opt/spack/linux-ubuntu16.04-x86_64/
gcc-5.4.0/openmpi-3.1.3-3njc4q5pqdpptq6jvqjrezkffwokv2sx/bin/mpicc responds to '-
show'... no
30 ./configure: line 4809: Echo: command not found
>> 31 configure: error: unable to locate adept-utils installation
1 error found in build log:
25 checking for ~/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/openmpi-3.1.3-3
njc4q5pqdpptq6jvqjrezkffwokv2sx/bin/mpicc... ~/spack/opt/spack/linux-ubuntu16.04-
x86_64/gcc-5.4.0/openmpi-3.1.3-3njc4q5pqdpptq6jvqjrezkffwokv2sx/bin/mpicc
26 Checking whether ~/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/openmpi-3.1
.3-3njc4q5pqdpptq6jvqjrezkffwokv2sx/bin/mpicc responds to '-showme:compile'... no
27 Checking whether ~/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/openmpi-3.1
.3-3njc4q5pqdpptq6jvqjrezkffwokv2sx/bin/mpicc responds to '-showme'... no
28 Checking whether ~/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/openmpi-3.1
.3-3njc4q5pqdpptq6jvqjrezkffwokv2sx/bin/mpicc responds to '-compile-info'... no
29 Checking whether ~/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/openmpi-3.1
.3-3njc4q5pqdpptq6jvqjrezkffwokv2sx/bin/mpicc responds to '-show'... no
30 ./configure: line 4809: Echo: command not found
>> 31 configure: error: unable to locate adept-utils installation
See build log for details:
/home/ubuntu/packaging/spack/var/spack/stage/mpileaks-1.0-csoikctsalli4cdkkdk377gprkc472rb/mpileaks-1.0/spack-build-out.txt
See build log for details:
~/spack/var/spack/stage/mpileaks-1.0-csoikctsalli4cdkkdk377gprkc472rb/mpileaks-1.0/spack-build-out.txt
Again, the problem may be obvious. But let's pretend we're not
all intelligent developers and use this opportunity spend some
all experienced Autotools developers and use this opportunity to spend some
time debugging. We have a few options that can tell us about
what's going wrong:
@ -364,7 +354,7 @@ finding its ``adept-utils`` package. Spack has
automatically added the include and library directories of
``adept-utils`` to the compiler's search path, but some packages like
mpileaks can sometimes be picky and still want things spelled out on
their command line. But let's continue to pretend we're not brilliant
their command line. But let's continue to pretend we're not experienced
developers, and explore some other debugging paths:
We can also enter the build area and try to manually run the build:
@ -374,7 +364,7 @@ We can also enter the build area and try to manually run the build:
$ spack build-env mpileaks bash
$ spack cd mpileaks
The ``spack env`` command spawned a new shell that contains the same
The ``spack build-env`` command spawned a new shell that contains the same
environment that Spack used to build the mpileaks package (you can
substitute bash for your favorite shell). The ``spack cd`` command
changed our working dirctory to the last attempted build for mpileaks.
@ -415,7 +405,7 @@ the command ourselves and debug as needed. We could, for example, run
dependencies.
We can use the ``exit`` command to leave the shell spawned by ``spack
env``.
build-env``.
------------------------------
Specifying Configure Arguments
@ -429,37 +419,39 @@ version can be found in
:lines: 6-
:language: python
This is all we need for working mpileaks! If we install now we'll see:
This is all we need for a working mpileaks package! If we install now we'll see:
.. code-block:: console
$ spack install mpileaks
...
==> Installing mpileaks
==> Searching for binary cache of mpileaks
==> Finding buildcaches in /mirror/build_cache
==> No binary for mpileaks found: installing from source
==> Using cached archive: /home/ubuntu/packaging/spack/var/spack/cache/mpileaks/mpileaks-1.0.tar.gz
==> Staging archive: /home/ubuntu/packaging/spack/var/spack/stage/mpileaks-1.0-csoikctsalli4cdkkdk377gprkc472rb/mpileaks-1.0.tar.gz
==> Created stage in /home/ubuntu/packaging/spack/var/spack/stage/mpileaks-1.0-csoikctsalli4cdkkdk377gprkc472rb
==> No patches needed for mpileaks
==> Building mpileaks [Package]
==> Executing phase: 'install'
==> Successfully installed mpileaks
Fetch: 0.00s. Build: 9.41s. Total: 9.41s.
[+] /home/ubuntu/packaging/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/mpileaks-1.0-csoikctsalli4cdkkdk377gprkc472rb
$ spack install mpileaks
...
==> Installing mpileaks
==> Searching for binary cache of mpileaks
==> Finding buildcaches in /mirror/build_cache
==> No binary for mpileaks found: installing from source
==> Using cached archive: ~/spack/var/spack/cache/mpileaks/mpileaks-1.0.tar.gz
==> Staging archive: ~/spack/var/spack/stage/mpileaks-1.0-csoikctsalli4cdkkdk377gprkc472rb/mpileaks-1.0.tar.gz
==> Created stage in ~/spack/var/spack/stage/mpileaks-1.0-csoikctsalli4cdkkdk377gprkc472rb
==> No patches needed for mpileaks
==> Building mpileaks [Package]
==> Executing phase: 'install'
==> Successfully installed mpileaks
Fetch: 0.00s. Build: 9.41s. Total: 9.41s.
[+] ~/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/mpileaks-1.0-csoikctsalli4cdkkdk377gprkc472rb
There are some special circumstances in package that are worth highlighting.
Normally spack would have automatically detected that mpileaks was an
Autotools-based package when we ran ``spack create`` and made it an ``AutoToolsPackage`` class (except we added the ``-t generic`` option to skip this). Instead of
There are some special circumstances in this package that are worth highlighting.
Normally, Spack would have automatically detected that mpileaks was an
Autotools-based package when we ran ``spack create`` and made it an ``AutoToolsPackage``
class (except we added the ``-t generic`` option to skip this). Instead of
a full install routine we would have just written:
.. code-block:: python
def configure_args(self):
args = ['--with-adept-utils=%s' % self.spec['adept-utils'].prefix,
'--with-callpath=%s' % self.spec['callpath'].prefix]
return args
def configure_args(self):
return [
'--with-adept-utils={0}'.format(self.spec['adept-utils'].prefix),
'--with-callpath={0}'.format(self.spec['callpath'].prefix)
]
Similarly, if this had been a CMake-based package we
would have been filling in a ``cmake_args`` function instead of
@ -473,7 +465,7 @@ Variants
We have a successful mpileaks build, but let's take some time to improve
it. ``mpileaks`` has a build-time option to truncate parts of the stack
that it walks. Let's add a variant to allow users to set this when they
build in Spack.
build mpileaks with Spack.
To do this, we'll add a variant to our package, as per the following (see
``$SPACK_ROOT/lib/spack/docs/tutorial/examples/5.package.py``):
@ -488,19 +480,19 @@ configure line (output truncated for length):
.. code-block:: console
$ spack install --verbose mpileaks stackstart=4
...
==> Installing mpileaks
==> Searching for binary cache of mpileaks
==> Finding buildcaches in /mirror/build_cache
==> No binary for mpileaks found: installing from source
==> Using cached archive: /home/ubuntu/packaging/spack/var/spack/cache/mpileaks/mpileaks-1.0.tar.gz
==> Staging archive: /home/ubuntu/packaging/spack/var/spack/stage/mpileaks-1.0-meufjojkxve3l7rci2mbud3faidgplto/mpileaks-1.0.tar.gz
==> Created stage in /home/ubuntu/packaging/spack/var/spack/stage/mpileaks-1.0-meufjojkxve3l7rci2mbud3faidgplto
==> No patches needed for mpileaks
==> Building mpileaks [Package]
==> Executing phase: 'install'
==> './configure' '--with-adept-utils=/home/ubuntu/packaging/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/adept-utils-1.0.1-7tippnvo5g76wpijk7x5kwfpr3iqiaen' '--with-callpath=/home/ubuntu/packaging/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/callpath-1.0.4-empvyxdkc4j4pwg7gznwhbiumruey66x' '--prefix=/home/ubuntu/packaging/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/mpileaks-1.0-meufjojkxve3l7rci2mbud3faidgplto' '--with-stack-start-c=4' '--with-stack-start-fortran=4'
$ spack install --verbose mpileaks stackstart=4
...
==> Installing mpileaks
==> Searching for binary cache of mpileaks
==> Finding buildcaches in /mirror/build_cache
==> No binary for mpileaks found: installing from source
==> Using cached archive: ~/spack/var/spack/cache/mpileaks/mpileaks-1.0.tar.gz
==> Staging archive: ~/spack/var/spack/stage/mpileaks-1.0-meufjojkxve3l7rci2mbud3faidgplto/mpileaks-1.0.tar.gz
==> Created stage in ~/spack/var/spack/stage/mpileaks-1.0-meufjojkxve3l7rci2mbud3faidgplto
==> No patches needed for mpileaks
==> Building mpileaks [Package]
==> Executing phase: 'install'
==> './configure' '--prefix=~/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/mpileaks-1.0-meufjojkxve3l7rci2mbud3faidgplto' '--with-adept-utils=~/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/adept-utils-1.0.1-7tippnvo5g76wpijk7x5kwfpr3iqiaen' '--with-callpath=~/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/callpath-1.0.4-empvyxdkc4j4pwg7gznwhbiumruey66x' '--with-stack-start-c=4' '--with-stack-start-fortran=4'
---------------
The Spec Object
@ -508,7 +500,7 @@ The Spec Object
This tutorial has glossed over a few important features, which weren't
too relevant for mpileaks but may be useful for other packages. There
were several places we references the ``self.spec`` object. This is a
were several places we reference the ``self.spec`` object. This is a
powerful class for querying information about what we're building. For
example, you could use the spec to query information about how a
package's dependencies were built, or what compiler was being used, or
@ -520,36 +512,36 @@ common queries:
.. code-block:: python
if self.spec.satisfies('@1.1:'):
# Do things needed for 1.1+
if self.spec.satisfies('@1.1:'):
# Do things needed for 1.1+
- Is ``openmpi`` the MPI I'm building with?
.. code-block:: python
if self.spec['mpi'].name == 'openmpi':
# Do openmpi things
if self.spec['mpi'].name == 'openmpi':
# Do openmpi things
- Am I building with ``gcc`` version less than ``5.0.0``:
.. code-block:: python
if self.spec.satisfies('%gcc@:5.0.0'):
# Add arguments specific to gcc's earlier than 5.0.0
if self.spec.satisfies('%gcc@:5.0.0'):
# Add arguments specific to gcc's earlier than 5.0.0
- Am I built with the ``debug`` variant:
- Am I building with the ``debug`` variant:
.. code-block:: python
if self.spec.satisfies('+debug'):
# Add -g option to configure flags
if self.spec.satisfies('+debug'):
# Add -g option to configure flags
- Is my ``dyninst`` dependency greater than version ``8.0``?
.. code-block:: python
if self.spec['dyninst'].satisfies('@8.0:'):
# Use newest dyninst options
# Use newest dyninst options
More examples can be found in the thousands of packages already added to
Spack in ``$SPACK_ROOT/var/spack/repos/builtin/packages``.
@ -560,7 +552,8 @@ To ensure that future sections of the tutorial run properly, please
uninstall mpileaks and remove the tutorial repo from your
configuration.
.. code-block: console
.. code-block:: console
$ spack uninstall -ay mpileaks
$ spack repo remove tutorial
$ rm -rf $SPACK_ROOT/var/spack/repos/tutorial/packages/mpileaks

33
var/spack/repos/builtin/packages/mpileaks/package.py
View File

@ -7,22 +7,33 @@
class Mpileaks(AutotoolsPackage):
"""Tool to detect and report leaked MPI objects like MPI_Requests and
MPI_Datatypes."""
"""Tool to detect and report MPI objects like MPI_Requests and
MPI_Datatypes."""
homepage = "https://github.com/hpc/mpileaks"
url = "https://github.com/hpc/mpileaks/releases/download/v1.0/mpileaks-1.0.tar.gz"
homepage = "https://github.com/LLNL/mpileaks"
url = "https://github.com/LLNL/mpileaks/releases/download/v1.0/mpileaks-1.0.tar.gz"
version('1.0', '8838c574b39202a57d7c2d68692718aa')
version('1.0', sha256='2e34cc4505556d1c1f085758e26f2f8eea0972db9382f051b2dcfb1d7d9e1825')
depends_on("mpi")
depends_on("adept-utils")
depends_on("callpath")
variant('stackstart', values=int, default=0,
description='Specify the number of stack frames to truncate')
depends_on('mpi')
depends_on('adept-utils')
depends_on('callpath')
def configure_args(self):
args = []
stackstart = int(self.spec.variants['stackstart'].value)
args.append("--with-adept-utils=%s" % self.spec['adept-utils'].prefix)
args.append("--with-callpath=%s" % self.spec['callpath'].prefix)
args = [
'--with-adept-utils={0}'.format(self.spec['adept-utils'].prefix),
'--with-callpath={0}'.format(self.spec['callpath'].prefix),
]
if stackstart:
args.extend([
'--with-stack-start-c={0}'.format(stackstart),
'--with-stack-start-fortran={0}'.format(stackstart)
])
return args