Add Amrvis package (#8590)
* First draft of amrvis package file. * More additions to amrvis. * Formatting. * Forcing compiler environment variables to point to spack mpi compilers when using mpi. * Disabling intel compiler for amrvis. * Comments. * Refining amrvis package file. * Moving library and include locations variables to be inserted at the first lines of the makefile. * Globbing amrvis binary instead of constructing its name. * Making env variable setting consistent and fixing globbing of executable. * Using iglob instead of glob. * Turning MPI on by default for Amrvis.
This commit is contained in:
Jon Rood
Adam J. Stewart
parent
a4ca2bb889
commit
f98657491d
188
var/spack/repos/builtin/packages/amrvis/package.py
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188
var/spack/repos/builtin/packages/amrvis/package.py
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##############################################################################
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# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999. #
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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import glob
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class Amrvis(MakefilePackage):
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"""Amrvis is a visualization package specifically designed to
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read and display output and profiling data from codes built
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on the AMReX framework.
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"""
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homepage = "https://github.com/AMReX-Codes/Amrvis"
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url = "https://github.com/AMReX-Codes/Amrvis.git"
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version('master',
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git='https://github.com/AMReX-Codes/Amrvis.git', tag='master')
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variant(
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'dims',
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default='3',
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values=('1', '2', '3'),
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multi=False,
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description='Number of spatial dimensions'
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)
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variant(
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'prec',
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default='DOUBLE',
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values=('FLOAT', 'DOUBLE'),
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multi=False,
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description='Floating point precision'
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)
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variant('mpi', default=True, description='Enable MPI parallel support')
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variant('debug', default=False, description='Enable debugging features')
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depends_on('gmake', type='build')
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depends_on('mpi', when='+mpi')
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depends_on('libsm')
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depends_on('libice')
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depends_on('libxpm')
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depends_on('libx11')
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depends_on('libxt')
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depends_on('libxext')
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depends_on('motif')
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# Only doing gcc and clang at the moment.
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# Intel currently fails searching for mpiicc, mpiicpc, etc.
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for comp in ['%intel', '%cce', '%nag', '%pgi', '%xl', '%xl_r']:
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conflicts(
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comp,
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msg='Amrvis currently only builds with gcc and clang'
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)
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# Need to clone AMReX into Amrvis because Amrvis uses AMReX's source
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resource(name='amrex',
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git='https://github.com/AMReX-Codes/amrex.git',
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tag='master',
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placement='amrex')
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def edit(self, spec, prefix):
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# Set all available makefile options to values we want
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makefile = FileFilter('GNUmakefile')
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makefile.filter(
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r'^AMREX_HOME\s*=.*',
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'AMREX_HOME = {0}'.format('./amrex')
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)
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makefile.filter(
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r'^PRECISION\s*=.*',
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'PRECISION = {0}'.format(spec.variants['prec'].value)
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)
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makefile.filter(
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r'^DIM\s*=.*',
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'DIM = {0}'.format(spec.variants['dims'].value)
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)
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makefile.filter(
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r'^PROFILE\s*=.*',
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'PROFILE = FALSE'
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)
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makefile.filter(
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r'^TRACE_PROFILE\s*=.*',
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'TRACE_PROFILE = FALSE'
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)
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makefile.filter(
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r'^COMM_PROFILE\s*=.*',
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'COMM_PROFILE = FALSE'
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)
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makefile.filter(
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r'^COMP\s*=.*',
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'COMP = {0}'.format(self.compiler.name)
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)
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makefile.filter(
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r'^DEBUG\s*=.*',
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'DEBUG = {0}'.format(spec.variants['debug'].value).upper()
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)
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makefile.filter(
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r'^USE_ARRAYVIEW\s*=.*',
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'USE_ARRAY_VIEW = FALSE'
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)
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makefile.filter(
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r'^USE_MPI\s*=.*',
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'USE_MPI = {0}'.format(spec.variants['mpi'].value).upper()
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)
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makefile.filter(
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r'^USE_CXX11\s*=.*',
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'USE_CXX11 = TRUE'
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)
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makefile.filter(
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r'^USE_VOLRENDER\s*=.*',
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'USE_VOLRENDER = FALSE'
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)
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makefile.filter(
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r'^USE_PARALLELVOLRENDER\s*=.*',
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'USE_PARALLELVOLRENDER = FALSE'
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)
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makefile.filter(
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r'^USE_PROFPARSER\s*=.*',
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'USE_PROFPARSER = FALSE'
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)
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# A bit risky here deleting all /usr and /opt X
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# library default search paths in makefile
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makefile.filter(
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r'^.*\b(usr|opt)\b.*$',
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'# Spack removed INCLUDE_LOCATIONS and LIBRARY_LOCATIONS'
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)
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# Read GNUmakefile into array
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with open('GNUmakefile', 'r') as file:
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contents = file.readlines()
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# Edit GNUmakefile includes and libraries to point to Spack
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# dependencies.
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# The safest bet is to put the LIBRARY_LOCATIONS and
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# INCLUDE_LOCATIONS at the beginning of the makefile.
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line_offset = 0
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count = 0
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for lib in ['libsm', 'libice', 'libxpm', 'libx11',
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'libxt', 'libxext', 'motif']:
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contents.insert(
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line_offset + count,
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'LIBRARY_LOCATIONS += {0}\n'.format(spec[lib].prefix.lib)
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)
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contents.insert(
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line_offset + count + 1,
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'INCLUDE_LOCATIONS += {0}\n'.format(spec[lib].prefix.include)
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)
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count += 1
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# Write GNUmakefile
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with open('GNUmakefile', 'w') as file:
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file.writelines(contents)
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def setup_environment(self, spack_env, run_env):
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# Help force Amrvis to not pick up random system compilers
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if '+mpi' in self.spec:
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spack_env.set('MPI_HOME', self.spec['mpi'].prefix)
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spack_env.set('CC', spec['mpi'].mpicc)
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spack_env.set('CXX', spec['mpi'].mpicxx)
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spack_env.set('F77', spec['mpi'].mpif77)
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spack_env.set('FC', spec['mpi'].mpifc)
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def install(self, spec, prefix):
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# Install exe manually
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mkdirp(prefix.bin)
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exes = glob.iglob('*.ex')
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for exe in exes:
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install(exe, prefix.bin)
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