cp2k: update to 4.1 + update of dependencies (#3561)

* libint: updated version, ported to AutotoolsPackage

* elpa: updated version, ported to AutotoolsPackage

* wannier90: updated version, ported to MakefilePackage

* pexsi: updated version, ported to MakefilePackage

* cp2k: updated version, removed wannier 90 from dependencies if cp2k@4.1

* plumed: updated version

Modifications:

* modules has been turned into a single variant, as different versions
  have different modules available
* added dictionaries for patches

* netlib-scalapack: ported to CMakePackage

var/spack/repos/builtin/packages/netlib-scalapack/package.py

@@ -26,7 +26,7 @@
 import sys
 
 
-class NetlibScalapack(Package):
+class NetlibScalapack(CMakePackage):
     """ScaLAPACK is a library of high-performance linear algebra routines for
     parallel distributed memory machines
     """
@@ -60,12 +60,16 @@ class NetlibScalapack(Package):
 
     @property
     def scalapack_libs(self):
+        # Note that the default will be to search
+        # for 'libnetlib-scalapack.<suffix>'
         shared = True if '+shared' in self.spec else False
         return find_libraries(
             'libscalapack', root=self.prefix, shared=shared, recurse=True
         )
 
-    def install(self, spec, prefix):
+    def cmake_args(self):
+        spec = self.spec
+
         options = [
             "-DBUILD_SHARED_LIBS:BOOL=%s" % ('ON' if '+shared' in spec else
                                              'OFF'),
@@ -89,13 +93,10 @@ def install(self, spec, prefix):
                 "-DCMAKE_Fortran_FLAGS=-fPIC"
             ])
 
-        options.extend(std_cmake_args)
-
-        with working_dir('spack-build', create=True):
-            cmake('..', *options)
-            make()
-            make("install")
+        return options
 
+    @run_after('install')
+    def fix_darwin_install(self):
         # The shared libraries are not installed correctly on Darwin:
-        if (sys.platform == 'darwin') and ('+shared' in spec):
-            fix_darwin_install_name(prefix.lib)
+        if (sys.platform == 'darwin') and ('+shared' in self.spec):
+            fix_darwin_install_name(self.spec.prefix.lib)