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r-phyloseq: Create new package. (#6518)

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lingnanyuan 2017-11-30 02:13:31 -06:00 committed by Massimiliano Culpo
parent 86fbcc7140
commit f9c820c39f
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##############################################################################
# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/spack/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RPhyloseq(RPackage):
"""phyloseq provides a set of classes and tools to facilitate the import,
storage, analysis, and graphical display of microbiome census data."""
homepage = "https://www.bioconductor.org/packages/phyloseq/"
url = "https://git.bioconductor.org/packages/phyloseq"
version('1.20.0', git='https://git.bioconductor.org/packages/phyloseq', commit='107d1d5e3437a6e33982c06a548d3cc91df2a7e0')
depends_on('r@3.4.0:3.4.9', when='@1.20.0')
depends_on('r-biocgenerics', type=('build', 'run'))
depends_on('r-ade4', type=('build', 'run'))
depends_on('r-ape', type=('build', 'run'))
depends_on('r-biomformat', type=('build', 'run'))
depends_on('r-biostrings', type=('build', 'run'))
depends_on('r-cluster', type=('build', 'run'))
depends_on('r-data-table', type=('build', 'run'))
depends_on('r-foreach', type=('build', 'run'))
depends_on('r-ggplot2', type=('build', 'run'))
depends_on('r-igraph', type=('build', 'run'))
depends_on('r-multtest', type=('build', 'run'))
depends_on('r-plyr', type=('build', 'run'))
depends_on('r-reshape2', type=('build', 'run'))
depends_on('r-scales', type=('build', 'run'))
depends_on('r-vegan', type=('build', 'run'))
depends_on('r-biobase', type=('build', 'run'))