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Update Nektar++ package (#43397)

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* Update Nektar++ package
* shorten line
* correct to 5.5.0
* use cmake helpers
* style

---------

Co-authored-by: JamesEdgeley <JamesEdgeley@users.noreply.github.com>
This commit is contained in:
James Edgeley 2024-03-27 17:55:14 +00:00 committed by GitHub
parent bbac33871c
commit faa183331f
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1 changed files with 148 additions and 16 deletions
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164
var/spack/repos/builtin/packages/nektar/package.py
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@ -3,6 +3,10 @@
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import os
import llnl.util.filesystem as fs
from spack.package import *
@ -10,30 +14,106 @@ class Nektar(CMakePackage):
"""Nektar++: Spectral/hp Element Framework"""
homepage = "https://www.nektar.info/"
url = "https://gitlab.nektar.info/nektar/nektar/-/archive/v4.4.1/nektar-v4.4.1.tar.bz2"
git = "https://gitlab.nektar.info/nektar/nektar.git"
version("5.0.0", sha256="5c594453fbfaa433f732a55405da9bba27d4a00c32d7b9d7515767925fb4a818")
version("4.4.1", sha256="71cfd93d848a751ae9ae5e5ba336cee4b4827d4abcd56f6b8dc5c460ed6b738c")
version("5.5.0", commit="4365d5d7156139f238db962deae5eb25e0437d12", preferred=True)
version("5.4.0", commit="002bf62648ec667e10524ceb8a98bb1c21804130")
version("5.3.0", commit="f286f809cfeb26cb73828c90a689a048898971d2")
variant("mpi", default=True, description="Builds with mpi support")
variant("fftw", default=True, description="Builds with fftw support")
variant("arpack", default=True, description="Builds with arpack support")
variant("tinyxml", default=True, description="Builds with external tinyxml support")
variant("hdf5", default=True, description="Builds with hdf5 support")
variant("scotch", default=False, description="Builds with scotch partitioning support")
variant("demos", default=False, description="Build demonstration codes")
variant("python", default=True, description="Enable python support")
# Solver variants
variant(
"acoustic_solver",
default=False,
description="Builds an executable associated with the Acoustic solver",
)
variant(
"adr_solver",
default=False,
description="Builds an executable associated with the ADR solver",
)
variant(
"cardiac_solver",
default=False,
description="Builds an executable associated with the Cardiac electrophysiology solver",
)
variant(
"compflow_solver",
default=False,
description="Builds an executable associated with the CompressibleFlow solver",
)
variant(
"diff_solver",
default=False,
description="Builds an executable associated with the Diffusion solver",
)
variant(
"dummy_solver",
default=False,
description="Builds an executable associated with the Dummy solver",
)
variant(
"elasticity_solver",
default=False,
description="Builds an executable associated with the Elasticity solver",
)
variant(
"imgwarp_solver",
default=False,
description="Builds an executable associated with the Image Warping solver",
)
variant(
"ins_solver",
default=False,
description="Builds an executable associated with the Incompressible Navier Stokes solver",
)
variant(
"mmf_solver",
default=False,
description="Builds an executable associated with the MMF solver",
)
variant(
"pulsewave_solver",
default=False,
description="Builds an executable associated with the Pulse Wave solver",
)
variant(
"shwater_solver",
default=False,
description="Builds an executable associated with the Shallow Water solver",
)
variant(
"vortexwave_solver",
default=False,
description="Builds an executable associated with the Vortex Wave solver",
)
depends_on("cmake@2.8.8:", type="build", when="~hdf5")
depends_on("cmake@3.2:", type="build", when="+hdf5")
depends_on("blas")
depends_on("zlib")
depends_on("tinyxml", when="+tinyxml")
depends_on("lapack")
depends_on(
"boost@1.56.0:"
"+iostreams+exception+filesystem+system+chrono+serialization"
"+atomic+regex+math+thread+container"
"boost@1.74.0: +thread +iostreams +filesystem +system +program_options +regex +pic"
"+python +numpy",
when="+python",
)
depends_on(
"boost@1.74.0: +thread +iostreams +filesystem +system +program_options +regex +pic",
when="~python",
)
depends_on("tinyxml", when="platform=darwin")
depends_on("mpi", when="+mpi")
depends_on("mpi", when="+mpi", type=("build", "link", "run"))
depends_on("fftw@3.0: +mpi", when="+mpi+fftw")
depends_on("fftw@3.0: ~mpi", when="~mpi+fftw")
depends_on("arpack-ng +mpi", when="+arpack+mpi")
@ -42,18 +122,70 @@ class Nektar(CMakePackage):
depends_on("scotch ~mpi ~metis", when="~mpi+scotch")
depends_on("scotch +mpi ~metis", when="+mpi+scotch")
extends("python@3:", when="+python")
conflicts("+hdf5", when="~mpi", msg="Nektar's hdf5 output is for parallel builds only")
def cmake_args(self):
args = []
def hasfeature(feature):
return "ON" if feature in self.spec else "OFF"
return True if feature in self.spec else False
args.append("-DNEKTAR_USE_MPI=%s" % hasfeature("+mpi"))
args.append("-DNEKTAR_USE_FFTW=%s" % hasfeature("+fftw"))
args.append("-DNEKTAR_USE_ARPACK=%s" % hasfeature("+arpack"))
args.append("-DNEKTAR_USE_HDF5=%s" % hasfeature("+hdf5"))
args.append("-DNEKTAR_USE_SCOTCH=%s" % hasfeature("+scotch"))
args.append("-DNEKTAR_USE_PETSC=OFF")
args = [
self.define_from_variant("NEKTAR_BUILD_DEMOS", "demos"),
self.define_from_variant("NEKTAR_BUILD_PYTHON", "python"),
self.define("NEKTAR_BUILD_SOLVERS", True),
self.define("NEKTAR_BUILD_UTILITIES", True),
self.define("NEKTAR_ERROR_ON_WARNINGS", False),
self.define_from_variant("NEKTAR_SOLVER_ACOUSTIC", "acoustic_solver"),
self.define_from_variant("NEKTAR_SOLVER_ADR", "adr_solver"),
self.define_from_variant("NEKTAR_SOLVER_CARDIAC_EP", "cardiac_solver"),
self.define_from_variant("NEKTAR_SOLVER_COMPRESSIBLE_FLOW", "compflow_solver"),
self.define_from_variant("NEKTAR_SOLVER_DIFFUSION", "diff_solver"),
self.define_from_variant("NEKTAR_SOLVER_DUMMY", "dummy_solver"),
self.define_from_variant("NEKTAR_SOLVER_ELASTICITY", "elasticity_solver"),
self.define_from_variant("NEKTAR_SOLVER_IMAGE_WARPING", "imgwarp_solver"),
self.define_from_variant("NEKTAR_SOLVER_INCNAVIERSTOKES", "ins_solver"),
self.define_from_variant("NEKTAR_SOLVER_MMF", "mmf_solver"),
self.define_from_variant("NEKTAR_SOLVER_PULSEWAVE", "pulsewave_solver"),
self.define_from_variant("NEKTAR_SOLVER_SHALLOW_WATER", "shwater_solver"),
self.define_from_variant("NEKTAR_SOLVER_VORTEXWAVE", "vortexwave_solver"),
self.define_from_variant("NEKTAR_USE_ARPACK", "arpack"),
self.define_from_variant("NEKTAR_USE_FFTW", "fftw"),
self.define_from_variant("NEKTAR_USE_HDF5", "hdf5"),
self.define_from_variant("NEKTAR_USE_MPI", "mpi"),
self.define("NEKTAR_USE_PETSC", False),
self.define_from_variant("NEKTAR_USE_SCOTCH", "scotch"),
self.define("NEKTAR_USE_THREAD_SAFETY", True),
self.define("NEKTAR_USE_MKL", hasfeature("^intel-oneapi-mkl")),
self.define("NEKTAR_USE_OPENBLAS", hasfeature("^openblas")),
]
return args
def install(self, spec, prefix):
super(Nektar, self).install(spec, prefix)
if "+python" in spec:
python = which("python")
with fs.working_dir(self.build_directory):
python("setup.py", "install", "--prefix", prefix)
def setup_run_environment(self, env):
env.append_path(
"CMAKE_PREFIX_PATH",
os.path.join(
self.spec.prefix, os.path.join("lib64", os.path.join("nektar++", "cmake"))
),
)
env.append_path(
"PYTHONPATH", os.path.abspath(os.path.join(self.spec.prefix, "build_tree"))
)
def setup_dependent_run_environment(self, env, dependent_spec):
self.setup_run_environment(env)
def setup_dependent_build_environment(self, env, dependent_spec):
self.setup_run_environment(env)
def add_files_to_view(self, view, merge_map, skip_if_exists=True):
super(Nektar, self).add_files_to_view(view, merge_map, skip_if_exists)
path = self.view_destination(view)
view.link(os.path.join(path, "lib64", "nektar++"), os.path.join(path, "lib", "nektar++"))