raxml-ng: new package at v1.0.1 (#20223)

var/spack/repos/builtin/packages/raxml-ng/package.py

@@ -0,0 +1,34 @@
+# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+
+
+class RaxmlNg(CMakePackage):
+    """RAxML-NG is a phylogenetic tree inference tool which uses
+    maximum-likelihood (ML) optimality criterion.
+
+    Its search heuristic is based on iteratively performing a series
+    of Subtree Pruning and Regrafting (SPR) moves,
+    which allows to quickly navigate to the best-known ML tree.
+    RAxML-NG is a successor of RAxML (Stamatakis 2014) and leverages
+    the highly optimized likelihood computation implemented in libpll
+    (Flouri et al. 2014)."""
+
+    homepage = "https://github.com/amkozlov/raxml-ng/wiki"
+    url      = "https://github.com/amkozlov/raxml-ng/archive/1.0.1.tar.gz"
+    git      = "https://github.com/amkozlov/raxml-ng.git"
+
+    version('1.0.1', submodules='True')
+
+    variant("mpi", default=True, description="Use MPI")
+
+    depends_on('bison')
+    depends_on('flex')
+    depends_on('gmp')
+    depends_on('mpi', when='+mpi')
+
+    def cmake_args(self):
+        return [self.define_from_variants('USE_MPI', 'mpi')]