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biobambam2: Add test method and test scripts. (#21504)

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Co-Authored-By: Tamara Dahlgren <dahlgren1@llnl.gov>
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takanori-ihara 2021-02-10 05:33:55 +09:00 committed by GitHub
parent 02a4abadfa
commit fe863b68b2
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var/spack/repos/builtin/packages/biobambam2/package.py
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@ -21,6 +21,26 @@ class Biobambam2(AutotoolsPackage):
depends_on('m4', type='build') depends_on('m4', type='build')
depends_on('libmaus2') depends_on('libmaus2')
test_src_dir = 'test'
def configure_args(self): def configure_args(self):
args = ['--with-libmaus2={0}'.format(self.spec['libmaus2'].prefix)] args = ['--with-libmaus2={0}'.format(self.spec['libmaus2'].prefix)]
return args return args
def _fix_shortsort(self):
"""Fix the testshortsort.sh file copied during installation."""
test_dir = join_path(self.install_test_root, self.test_src_dir)
filter_file('../src/', '', join_path(test_dir, 'testshortsort.sh'))
@run_after('install')
def cache_test_sources(self):
"""Copy the test source files after the package is installed to an
install test subdirectory for use during `spack test run`."""
self.cache_extra_test_sources(self.test_src_dir)
self._fix_shortsort()
def test(self):
test_dir = join_path(self.install_test_root, self.test_src_dir)
self.run_test('sh', ['testshortsort.sh'],
expected='Alignments sorted by coordinate.',
work_dir=test_dir)