SC17: reworked module file tutorial section (#5657)

* Reworked module file tutorial section

First draft for the SC17 update. This includes:

 - adding an introduction on module files + Spack's module
   generation blueprints
 - adding a set-up section and provide a docker image for easy set-up
 - updating all the relevant snippets
 - extending a bit some of the concepts that were already touched

* Added reference to #5582 + committed Dockerfiles

Also fixed a couple of typos spotted by Denis.

* module file tutorial: added section on template customization

* module file tutorial: fixed minor typos + rephrased a sentence

* module file tutorial: made explicit that Docker image comes with software

* module file tutorial: improved phrasing and layout.

Thanks Hartzell!

* module file tutorial: added vim and nano to editors

* module file tutorial: fixed typo

* Fixed typos

Thanks Adam!

* module file tutorial: updated Dockerfile + minor changes in introduction
This commit is contained in:
Massimiliano Culpo
2017-11-12 09:27:20 +01:00
committed by Todd Gamblin
parent 1008975bc0
commit fe889124eb
6 changed files with 1980 additions and 363 deletions

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FROM ubuntu:16.04
# General environment for docker
ENV DEBIAN_FRONTEND=noninteractive \
SPACK_ROOT=/usr/local \
FORCE_UNSAFE_CONFIGURE=1
# Install system packages
RUN apt-get update \
&& apt-get install -y --no-install-recommends \
autoconf \
build-essential \
ca-certificates \
coreutils \
curl man less \
emacs-nox vim nano \
git \
openmpi-bin openmpi-common libopenmpi-dev \
python \
unzip \
&& rm -rf /var/lib/apt/lists/*
# Load spack environment on login
COPY spack.sh /etc/profile
# Install spack
RUN curl -s -L https://api.github.com/repos/spack/spack/tarball/develop \
| tar xzC $SPACK_ROOT --strip 1
# Copy configuration for external packages
COPY packages.yaml $SPACK_ROOT/etc/spack/
# Build lmod
RUN spack install lmod && spack clean -a
# Build a compiler
RUN spack install gcc@7.2.0 && spack clean -a
RUN /bin/bash -l -c ' \
spack load gcc@7.2.0 \
&& spack compiler add'
# Build the software on top of the compiler
RUN spack install netlib-scalapack ^openmpi ^openblas %gcc@7.2.0 \
&& spack install netlib-scalapack ^mpich ^openblas %gcc@7.2.0 \
&& spack install netlib-scalapack ^openmpi ^netlib-lapack %gcc@7.2.0 \
&& spack install netlib-scalapack ^mpich ^netlib-lapack %gcc@7.2.0 \
&& spack install py-scipy ^openblas \
&& spack clean -a
# image run hook: the -l will make sure /etc/profile environments are loaded
CMD /bin/bash -l

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@@ -0,0 +1,9 @@
packages:
git:
buildable: False
paths:
git@2.9.4: /usr
openmpi:
buildable: False
paths:
openmpi@1.10.2: /usr

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source $SPACK_ROOT/share/spack/setup-env.sh
LMOD_DIR=$(spack location -i lmod)
if [[ $LMOD_DIR ]] ; then
source ${LMOD_DIR}/lmod/lmod/init/bash
source $SPACK_ROOT/share/spack/setup-env.sh
fi