fqtrim: Create new package (#10861)

var/spack/repos/builtin/packages/fqtrim/package.py

@@ -0,0 +1,25 @@
+# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+
+
+class Fqtrim(MakefilePackage):
+    """fqtrim is a versatile stand-alone utility that can be used to trim
+    adapters, poly-A tails, terminal unknown bases (Ns) and low quality 3'
+    regions in reads from high-throughput next-generation sequencing
+    machines."""
+
+    homepage = "https://ccb.jhu.edu/software/fqtrim/"
+    url      = "http://ccb.jhu.edu/software/fqtrim/dl/fqtrim-0.9.7.tar.gz"
+
+    version('0.9.7', sha256='4951538f69dde14a23fc4841ff020434d26eb9622c4e06b43c068c702aa3d0d6')
+
+    def build(self, spec, prefix):
+        make('release')
+
+    def install(self, spec, prefix):
+        mkdirp(prefix.bin)
+        install('fqtrim', prefix.bin)