* Remove fake URLs from Spack
* Ignore long lines for URLs that start with ftp:
* Preliminary changes to version regexes
* New redesign of version regexes
* Allow letters in version-only
* Fix detection of versions that end in Final
* Rearrange a few regexes and add examples
* Add tests for common download repositories
* Add test cases for common tarball naming schemes
* Finalize version regexes
* spack url test -> spack url summary
* Clean up comments
* Rearrange suffix checks
* Use query strings for name detection
* Remove no longer necessary url_for_version functions
* Strip off extraneous information after package name
* Add one more test
* Dot in square brackets does not need to be escaped
* Move renaming outside of parse_name_offset
* Fix versions for a couple more packages
* Fix flake8 and doc tests
* Correctly parse Python, Lua, and Bio++ package names
* Use effective URLs for mfem
* Add checksummed version to mitos
* Remove url_for_version from STAR-CCM+ package
* Revert changes to version numbers with underscores and dashes
* Fix name detection for tbb
* Correctly parse Ruby gems
* Reverted mfem back to shortened URLs.
* Updated instructions for better security
* Remove preferred=True from newest version
* Add tests for new `spack url list` flags
* Add tests for strip_name_suffixes
* Add unit tests for version separators
* Fix bugs related to parseable name but in parseable version
* Remove dead code, update docstring
* Ignore 'binary' at end of version string
* Remove platform from version
* Flip libedit version numbers
* Re-support weird NCO alpha/beta versions
* Rebase and remove one new fake URL
* Add / to beginning of regex to avoid picking up similarly named packages
* Ignore weird tar versions
* Fix bug in url parse --spider when no versions found
* Less strict version matching for spack versions
* Don't rename Python packages
* Be a little more selective, version must begin with a digit
* Re-add fake URLs
* Fix up several other packages
* Ignore more file endings
* Add parsing support for Miniconda
* Update tab completion
* XFAILS are now PASSES for 2 web tests
- Update YAML version to support Python 3
- Python 3 support for ordereddict backport
- Exclude Python3 YAML from version tests.
- Vendor six into Spack.
- Make Python version-check tests work with Python 3
- Add ability to add version check exceptions with '# nopyqver' line
comments.
* perl: make extendable and add Module::Build package
* perl: allow 'spack create' to identify perl packages from their contents
* perl-module-build: fix indenting of package docstring
* perl: split install() method for extensions into phases
* perl: auto-detect build method (Makefile.PL vs Build.PL) and define a 'check' method
* PerlPackage: use import statements similar to those in AutotoolsPackage
* PerlModule: fix detection of Build.PL
* PerlPackageTemplate: remove extraneous lines to avoid flake8 warnings
* PerlPackageTemplate: split into separate templates for Makefile.PL and Build.PL
* PerlPackage: add cross-references to docstrings
* AutotoolsPackage: fix ambiguous cross-references to avoid errors in doc tests
* PerlbuildPackageTemplate: depend on perl-module-build if Build.PL exists
* Replace `spack urls` and `spack url-parse` with `spack url`
* Allow spack url list to only list incorrect parsings
* Add spack url test reporting
* Add unit tests for new URL commands
* PackageMeta: `run_before` is an alias of `precondition`, `run_after` an alias of `sanity_check`
* PackageMeta: removed `precondition` and `sanity_check`
* PackageMeta: decorators are now free-standing
* package: modified/added docstrings. Fixed the semantics of `on_package_attributes`.
* package: added unit test assertion as side effects of install
* build_systems: factored build-time test running into base class
* r: updated decorators in package.py
* docs: updated decorator names
* documentation: reworked packaging guide to add build-system phases
* documentation: improvements to AutotoolsPackage autodocs
* build_systems: updated autodocs
* run-tests: added a few information on how to run tests fixes#2606 fixes#2605
* documentation: fixed items brought up by @davydden
* typos in docs
* consistent use of 'build system' (i.e. removed 'build-system' from docs)
* added a note on possible default implementations for build-time tests
* documentation: fixed items brought up by @citibeth
* added note to explain the difference between build system and language used in a package
* capitalized bullet items
* added link to API docs
* documentation: fixed multiple cross-references after rebase
* documentation: fixed minor issues raised by @tgamblin
* documentation: added entry in table for the `PythonPackage` class
* docs: fixed issues brought up by @citybeth in the second review
* Initial changes to spack create command
* Get 'spack create <url>' working again
* Simplify call to BuildSystemGuesser
* More verbose output of spack create
* Remove duplicated code from spack create and spack checksum
* Add better documentation to spack create docstrings
* Fix pluralization bug
* Flake8
* Update documentation on spack create and deprecate spack edit --force
* Make it more obvious when we are renaming a package
* Further deprecate spack edit --force
* Fix unit tests
* Rename default template to generic template
* Don't add automake/autoconf deps to Autotools packages
* Remove changes to default $EDITOR
* Completely remove all traces of spack edit --force
* Remove grammar changes to make the PR easier to review
* Fixed parser to eliminate need for escape quotes. TODO: Fix double call to shlex, fix spaces in spec __str__
* Fixed double shlex
* cleanup
* rebased on develop
* Fixed parsing for multiple specs; broken since #360
* Revoked elimination of the `-` sigil in the syntax, and added it back into tests
* flake8
* more flake8
* Cleaned up dead code and added comments to parsing code
* bugfix for spaces in arguments; new bug found in testing
* Added unit tests for kv pairs in parsing/lexing
* Even more flake8
* ... yet another flake8
* Allow multiple specs in install
* unfathomable levels of flake8
* Updated documentation to match parser fix
* Removing the nobuild, nolink, and alldeps dependency types in favor of being explicit.
* This will help with maintenance going forward, as adding more dependency types won't affect existing declared dependencies in weird ways.
* default deptype is still `('build', 'link')`
* Rename packages
* Upcasing depends_on() in packages.
* Downcased extends('r')
* Fixed erroneously changed URL that had slipped through.
* Fixed typo
* Fixed link from documentation into package source code.
* Fixed another doc problem.
* Changed underscores to dashes in package names.
* Added test to enforce lowercase, no-underscore naming convention.
* Fix r-xgboost
* Downcase more instances of 'R' in package auto-creation.
* Fix test.
* Converted unit test packages to use dashes not underscores
* Downcase `r` in the docs.
* Update module_file_support.rst
Fix r->R for class R.
* Porting: substitute nose with ytest
This huge commit substitutes nose with pytest as a testing system. Things done here:
* deleted external/nose as it is no longer used
* moved mock resources in their own directory 'test/mock/'
* ported two tests (cmd/find, build_system) to pytest native syntax as an example
* build_environment, log: used monkeypatch instead of try/catch
* moved global mocking of fetch_cache to an auto-used fixture
* moved global mocking from test/__init__.py to conftest.py
* made `spack test` a wrapper around pytest
* run-unit-tests: avoid running python 2.6 tests under coverage to speed them up
* use `pytest --cov` instead of coverage run to cut down testing time
* mock/packages_test: moved mock yaml configuration to files instead of leaving it in the code as string literals
* concretize.py: ported tests to native pytest, reverted multiprocessing in pytest.ini as it was creating the wrong report for coveralls
* conftest.py, fixtures: added docstrings
* concretize_preferences.py: uses fixtures instead of subclassing MockPackagesTest
* directory_layout.py: uses fixtures instead of subclassing MockPackagesTest
* install.py: uses fixtures instead of subclassing MockPackagesTest
* optional_deps.py: uses fixtures instead of subclassing MockPackagesTest
optional_deps.py: uses fixtures instead of subclassing MockPackagesTest
* packages.py: uses fixtures instead of subclassing MockPackagesTest
* provider_index.py: uses fixtures instead of subclassing MockPackagesTest
* spec_yaml.py: uses fixtures instead of subclassing MockPackagesTest
* multimethod.py: uses fixtures instead of subclassing MockPackagesTest
* install.py: now uses mock_archive_url
* git_fetch.py: uses fixtures instead of subclassing MockPackagesTest
* hg_fetch.py: uses fixtures instead of subclassing MockPackagesTest
* svn_fetch.py, mirror.py: uses fixtures instead of subclassing MockPackagesTest
repo.py: deleted
* test_compiler_cmd.py: uses fixtures instead of subclassing MockPackagesTest
* cmd/module.py, cmd/uninstall.py: uses fixtures instead of subclassing MockDatabase
* database.py: uses fixtures instead of subclassing MockDatabase, removed mock/database
* pytest: uncluttering fixture implementations
* database: changing the scope to 'module'
* config.py: uses fixtures instead of subclassing MockPackagesTest
* spec_dag.py, spec_semantics.py: uses fixtures instead of subclassing MockPackagesTest
* stage.py: uses fixtures instead of subclassing MockPackagesTest. Removed mock directory
* pytest: added docstrings to all the fixtures
* pytest: final cleanup
* build_system_guess.py: fixed naming and docstrings as suggested by @scheibelp
* spec_syntax.py: added expected failure on parsing multiple specs closes#1976
* Add pytest and pytest-cov to Spack externals.
* Make `spack flake8` ignore externals.
* run-unit-tests runs spack test and not pytest.
* Remove all the special stuff for `spack test`
- Remove `conftest.py` magic and all the special case stuff in `bin/spack`
- Spack commands can optionally take unknown arguments, if they want to
handle them.
- `spack test` is now a command like the others.
- `spack test` now just delegates its arguments to `pytest`, but it does
it by receiving unknown arguments and NOT taking an explicit
help argument.
* Fix error in fixtures.
* Improve `spack test` command a bit.
- Now supports an approximation of the old simple interface
- Also supports full pytest options if you want them.
* Use external coverage instead of pytest-cov
* Make coverage use parallel-mode.
* change __init__.py docs to include pytest
* Ensure that every package has a license
Also fixes URLs with http://http:// doubled.
This is a continuation of #2656.
* Add license to every file in Spack
* Make sure Todd is the author of all packages
* Fix flake8 tests
* Don't license external Sphinx docs
* Don't display licenses in tutorial example packages
Also fixes typos and converts command-line examples
from tcsh to bash, which is more common
* Add documentation for repositories and namespaces.
* Update and extend repository documentation per review.
- Also add `-N` argument for `spack spec`
The advanced [Uninstalling Packages](spack.readthedocs.io/en/latest/tutorial_sc16_spack_basics.html#uninstalling-packages) via hash has a couple missing `.. code-block:: console` directives ;)
I have no idea what branch to direct this to though...
- Seems like older git versions won't be able to clone an LFS repo.
- Reverting to an external link for the slides to avoid storing an 8MB
file in the repo and to avoid using git LFS.
* Allow compiler wrapper to modify environment
This adds the ability to set environment variables in the compiler
wrappers. These are specified as part of the compilers.yaml config.
The user may also specify RPATHs in compilers.yaml that should be
added.
* Minor doc tweak
* Wordsmithing/minor-edits to module tutorial
A small set of wordsmithing, spell checking and minor edits to the fancy
new modules tutorial!
* Fix typo (sneaky z key...)
* Fix "S:" and "manual<" typos
* module files tutorial : first complete draft
- first complete draft for module files tutorial
- minor corrections to module file reference
* module file tutorial : first batch of corrections
- module avail spelled out fully
- typos from @adamjstewart
- rewording of a few sentences
* module file tutorial : first batch of corrections
- emphasized lines in yaml files
* module file tutorial : fixes according to @citibeth and @adamjstewart reviews
- used long format for command options
- reworded unclear sentence on tokes
- reworked table in reference manual to make it clearer
* module file tutorial : implemented corrections collected on site from @schlyfts
* module file tutorial : removed comment (@hartzell suggestion)
- Ported old run-flake8-tests qa script to `spack flake8` command.
- New command does not modify files in the source tree
- Copies files to a temp stage modifies them there, and runs tests.
- Updated docs and `run-flake8-tests` script to call `spack flake8`.
- Added a schema for config.yaml
- Moved install tree configuration to config.yaml
- Moved etc/spack/install.yaml to etc/spack/defaults/config.yaml
- renamed install_area to "store", to use a term in common with guix/nix.
- in `config.yaml` file, it's called the `install_tree` to be more
intuitive to users.
- `install_tree` might've worked in the code, but `install_tree` is
already a global function in the spack namespace, from
llnl.util.filesystem.
* module file support: major rework of docs
* module file support: fixed issues found by @adamjstewart
- list or enumeration should not be indented
- use console instead of bash or csh in things that are not scripts
- other typos
* module file support: fixed other issues found by @adamjstewart
- tables should not be indented
- substitute lines with pyobject to import an entire function
- get help output running commands
- typos
* module file support: fixes according to review comments
- @citibeth moved `spack module loads` after `spack load`
- @glennpj tried to clarify installation table + changes to language
- @tgamblin Removed top level section and moved the whole thing into the reference manual
* module file support: moved directive before spack module loads
