Commit Graph

39892 Commits

Author SHA1 Message Date
danielsjensen1
43a0cbe7a2
py-sphinx-rtd-theme: add v2.0.0, v3.0.0 (#48756)
* Add versions 2 and 3 of py-sphinx-rtd-theme.
   Allow for versions of py-sphinx greater than 6.
   Fix the Python version for older versions that depend on distutils.
   Get the py-docutils dependency from the py-sphinx recipe.
* Depend purely on the py-docutils dependency in py-sphinx.
* More refined dependency versioning.
* Fixed versioning for py-sphinx and py-docutils.
2025-01-31 22:46:44 -07:00
Greg Becker
bb35a98079
env create: create copies of relative include files in envs created from manifest (#48689)
Currently, environments created from manifest files with relative includes result in broken
references to config files.

This PR modifies `spack env create` to create local copies in the new environment of any local
config files from relative paths in the environment manifest passed as an init file.

This PR does not change the behavior if the include is an absolute path or if the include is from
a relative path outside the environment directory, but it does warn about missing relative includes if
they are inside the environment directory.

Includes regression test and short blurb in docs.
2025-02-01 01:41:18 +00:00
Richard Berger
fa7e0e8230
kokkos-nvcc-wrapper: add version 4.5.00 and 4.5.01 (#48802) 2025-01-31 16:47:39 -07:00
Dominic Hofer
2c128751f5
Remove patch on main (#48798)
Patch got merged: https://github.com/natefoo/slurm-drmaa/pull/62
2025-01-31 12:51:34 -07:00
wspear
fb0493a366
Added salt variant to tau (#48782)
* Added salt variant to tau

* Update package.py

* [@spackbot] updating style on behalf of wspear

---------

Co-authored-by: wspear <wspear@users.noreply.github.com>
2025-01-31 13:44:10 -06:00
Brian Spilner
6d1b6e7087
add cdo@2.5.0 (#48801) 2025-01-31 12:05:42 -07:00
psakievich
759518182c
Bug Fix: Better incremental check for CMake (#48775)
* Bug Fix: Better incremental check for CMake

* Fix syntax error

* Ensure match of config artifact with generator
2025-01-31 08:48:41 -06:00
Rocco Meli
7ebabfcf0e
libsmeagol (#48776)
* libsmeagol

* add support for intel and add conflicts

* cp2k
2025-01-31 12:11:13 +01:00
Satish Balay
6203ae31d2
petsc, py-petsc4py: add v3.22.3 (#48785) 2025-01-31 02:11:16 -07:00
Harmen Stoppels
6b13017ded
Remove unused values (#48795)
Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2025-01-31 08:21:44 +01:00
Harmen Stoppels
2c51b5853f
spack.package: re-export EnvironmentModifications / Prefix (#48792) 2025-01-31 08:20:15 +01:00
Harmen Stoppels
d0cbd056a8
spack.package: wrap llnl.util.tty (#48793)
avoid import of llnl.util.tty in packages
2025-01-31 08:17:29 +01:00
Adam J. Stewart
e1b579a8b4
py-sphinx: mark Python compatibility (#48796) 2025-01-30 11:27:57 -08:00
Harmen Stoppels
b02dcf697d
Move from python2 compliant IOError and EnvironmentError to python3-only OSError (#48764)
* IOError -> OSError

* also do EnvironmentError
2025-01-30 09:32:57 -08:00
Satish Balay
6e046b04c7
hipblaslt: update cmake dependency (#48637)
* hipblaslt: update cmake dependency

1 error found in build log:
  >> 3    CMake Error at CMakeLists.txt:24 (cmake_minimum_required):
     4      CMake 3.25.2 or higher is required.  You are running version 3.22.1
     5
     6
     7    -- Configuring incomplete, errors occurred!

See build log for details:
  /scratch/svcpetsc/spack-rocm/spack-stage/spack-stage-hipblaslt-6.3.0-pabb7t4rheqkz74lfzbsnqi6vnpiqwlq/spack-build-out.txt

* Update var/spack/repos/builtin/packages/hipblaslt/package.py

Co-authored-by: afzpatel <122491982+afzpatel@users.noreply.github.com>

---------

Co-authored-by: afzpatel <122491982+afzpatel@users.noreply.github.com>
2025-01-30 09:20:34 -08:00
Rocco Meli
d196795437
libxc: add CMake builder (#48772)
* libsmeagol

* libxc cmake

* cmake support

* revert changes

* make spackbot happy

* fix

* Update package.py
2025-01-30 18:13:07 +01:00
Chris Marsh
0d444fb4e7
Add py-zarr 3, which includes a new required package py-donfig, and a bug fix to the patch range with numcodecs (#48786) 2025-01-30 06:55:15 -08:00
Todd Gamblin
467e631260
abinit: pass flag correctly (#48788) 2025-01-30 11:44:00 +01:00
Harmen Stoppels
f21de698f7
builtin: remove redundant imports (#48765)
* builtin: remove redundant llnl.util.filesystem import
* remove redundant import spack.version
* unsorted fixes
* more spack.version
2025-01-30 09:18:47 +01:00
John W. Parent
59532986be
CMake: add v3.31.5, v3.30.7 (#48759) 2025-01-29 19:03:50 -07:00
Alec Scott
36fd547b40
smee-client: add v2.0.4 (#48384) 2025-01-29 16:22:04 -08:00
wspear
b5f9dea6d0
Create SALT package.py (#48758)
* Create SALT package.py

Added a package for the SALT Source AnaLysis Toolkit
@zbeekman

* [@spackbot] updating style on behalf of wspear

* Update package.py

Line wrap

---------

Co-authored-by: wspear <wspear@users.noreply.github.com>
2025-01-29 15:47:48 -06:00
Eric Berquist
5904834295
binutils: conflict on configuration with build issues (#42949) 2025-01-29 22:38:44 +01:00
Tamara Dahlgren
2da8a1d1e3
Docs/bugfix: correct return for Adding flags to configure (#48434) 2025-01-29 13:04:22 -08:00
Juan Miguel Carceller
d50eba40d9
fmt: simplify +pic (#48766)
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2025-01-29 14:02:40 -07:00
Jonathon Anderson
8d3a733b77
hpctoolkit: Add +docs variant and manpages (#48566)
* py-mdit-py-plugins: Add new versions 0.3.5, 0.4.2
  Signed-off-by: Jonathon Anderson <anderson.jonathonm@gmail.com>
* py-myst-parser: Add new versions 0.19.0 to 4.0.0
  Signed-off-by: Jonathon Anderson <anderson.jonathonm@gmail.com>
* hpctoolkit: Add +docs variant and manpages
   This commit unconditionally enables manpages for the HPCToolkit tools.
   The new `+docs` variant enables additional documentation, specifically
   the user's manual. Both require new build-time dependencies.
  Signed-off-by: Jonathon Anderson <anderson.jonathonm@gmail.com>

---------

Signed-off-by: Jonathon Anderson <anderson.jonathonm@gmail.com>
2025-01-29 09:26:54 -08:00
Richard Berger
dfa86dce08
petsc: only conflict with kokkos@4.5: if it is enabled (#48698) 2025-01-29 10:07:58 -07:00
Massimiliano Culpo
3d82e5c573
Remove pipelines and images based on ppc64le (#48767) 2025-01-29 16:36:25 +01:00
Harmen Stoppels
a77f903f4d
py-cmake: remove. remove deprecated cmake versions (#48763) 2025-01-29 15:06:32 +01:00
Harmen Stoppels
92260b179d
package api: drop wildcard re-export (#48760)
* package api: drop wildcard re-export

To ensure package repos are forward/backward compatibility with Spack,
we should explicitly export all symbols we want to expose in the public
package API, and drop `from spack.something import *` because
removal/addition to the public API will go unnoticed.

Also `llnl.util.filesystem` has some methods that shouldn't be exposed
in the package API, so better to enumerate a subset explicitly.

* remove flatten_dependencies / install_dependency_symlinks
2025-01-29 15:00:39 +01:00
Massimiliano Culpo
196c912b8a
Deprecate frontend/backend os/target (#47756) 2025-01-29 13:22:51 +01:00
G-Ragghianti
0f54995e53
MAGMA: add v2.9.0 (#48750) 2025-01-29 00:17:37 -07:00
Filippo Spiga
9d1332f1a1
ucx: adding 1.18.0 (#48742)
* Adding UCX 1.18.0
* Verified and correct hash.
2025-01-28 09:26:19 -07:00
Massimiliano Culpo
40a1da4a73
spec.py: fix ArchSpec.intersects (#48741)
fixes a bug where `x86_64:` and `ppc64le:` intersected, and x86_64: and :haswell did not.
2025-01-28 16:46:09 +01:00
Satish Balay
82e091e2c2
petsc+rocm: add dependency on hipblas-common (#48644) 2025-01-28 09:45:12 -06:00
Thomas-Ulrich
c86112b0e8
update hypre version and add new memalign for petsc (#47831) 2025-01-28 09:42:42 -06:00
jmuddnv
bb25c04845
Changes for NVIDIA HPC SDK 25.1 (#48696) 2025-01-28 07:05:33 -07:00
Buldram
d69d26d9ce
toybox: add v0.8.12 (#48657) 2025-01-28 14:47:22 +01:00
snehring
06d660b9ba
autodock-vina: adding version 1.2.6 (#48684)
Signed-off-by: Shane Nehring <snehring@iastate.edu>
2025-01-28 14:28:28 +01:00
snehring
40b3196412
py-ipyrad: adding version 0.9.102 (#48686)
Signed-off-by: Shane Nehring <snehring@iastate.edu>
2025-01-28 14:27:16 +01:00
Juan Miguel Carceller
7e893da4a6
thepeg: extend the rivet@:3 dependency up to version 2.3 (#48691)
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2025-01-28 14:25:02 +01:00
David Schneller
13aa8b6867
easi: add v1.5.1; relax yaml-cpp and lua requirements (#48675) 2025-01-28 14:23:57 +01:00
Adam J. Stewart
b0afb619de
py-geemap: add new package (#48602) 2025-01-28 14:12:25 +01:00
Adam J. Stewart
7a82c703c7
JAX: add v0.4.32+ (#46346)
* JAX: add v0.4.34

* Disable search for clang

* Update CUDA flags

* Add py-jax 0.4.33, comment out until py-jaxlib 0.4.33 is also released

* Fix GCC build

* Try TF_NVCC_CLANG

* py-jax: add v0.4.34

* jax no longer has separate tags for jaxlib

* Install compiled wheel

* Join path before glob

* Wheel is in spack stage, not tmp path

* Add 0.4.35

* Add newer versions

* Build system has been refactored yet again

* Drop clang

* Fix build with source tarball, rocm support

* Support GCC

* Remove clang-specific compiler flags

* enable_cuda flag was removed

* Fix logic

* py-jax: add v0.4.38

* Add patch to fix GCC support

* Patch no longer needed

* Skip patching, directly pass flags

* New flags

* Remove unused import

* Patch changed

* Use older version of patch

* Newer patch

* Add CUDA symlink

* Symlink more directories

* Recursive symlink

* Import function

* Recursive search

* Undo cuda changes

* Add v0.5.0

* I quit
2025-01-28 13:37:50 +01:00
G-Ragghianti
0d3667175a
papi: fix error finding gmake during post-install testing (#48592) 2025-01-28 12:51:10 +01:00
Wouter Deconinck
a754341f6c
hep stack: additional event generator packages (#48565)
* hep stack: additional event generator packages

* hep: adidtional packages

* hep: collier doesn't have +pic +shared

* py-awkward-cpp: fix scikit-build-core range of applicability

* hep: disable agile

* hep: disable garfieldpp and genie

* py-wxpython: depends_on pkgconfig even if using external wxwidgets

* hep: disable professor
2025-01-28 05:38:58 -06:00
Thomas Bouvier
a50c45f00c
py-flash-attn: add missing triton dependency (#48645) 2025-01-28 11:43:27 +01:00
Sreenivasa Murthy Kolam
87e65e5377
Bump up the version for rocm-6.3.1 release (#48440)
This PR updates the versions for the rocm recipes for rocm-6.3.1 release.
2025-01-28 01:53:55 -08:00
Etienne Ndamlabin
50fe96aaf6
damaris: add v1.12.0, update maintainers (#48674)
Co-authored-by: Etienne Ndamlabin <jean-etienne.ndamlabin-mboula@inria.fr>
2025-01-28 10:13:21 +01:00
Rocco Meli
56495a8cd8
dftd4, mctc-lib: enable cmake builds and add multicharge package (#48594)
* enable cmake builds

* [@spackbot] updating style on behalf of RMeli

* Update var/spack/repos/builtin/packages/dftd4/package.py

Co-authored-by: Sebastian Ehlert <28669218+awvwgk@users.noreply.github.com>

* Update var/spack/repos/builtin/packages/mctc-lib/package.py

* include

* fix

* use sha256

* update

---------

Co-authored-by: RMeli <RMeli@users.noreply.github.com>
Co-authored-by: Sebastian Ehlert <28669218+awvwgk@users.noreply.github.com>
2025-01-28 09:53:22 +01:00