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Author SHA1 Message Date
Todd Gamblin
00f91ab22b checksums: Remove or fix up unfetchable or unverifiable md5 versions 
This commit either removes remaining md5 checksums, or it replaces them
with sha256 checksums verified by fetching over https.
 2019-10-12 07:19:43 -07:00
Todd Gamblin
62927654dd checksums: use sha256 checksums everywhere 
We'd like to use a consistent checksum scheme everywhere so that we can:

    a) incorporate archive checksums into our specs and have a
       consistent hashing algorithm across all specs.

    b) index mirrors with a consistent type of checksum, and not one that
       is dependent on how spack packages are written.

- [x] convert existing md5, sha224, sha512, sha1 checksums to sha256
 2019-10-12 07:19:43 -07:00
Matthew LeGendre
87fa7c15fc Add adiak package, version 0.1.1 2019-10-11 21:22:33 -07:00
Massimiliano Culpo
f8a4a3802c Autotools build system to patch config.guess based on a range check 2019-10-11 21:21:57 -07:00
Massimiliano Culpo
8dd95c1705 Fixed options to compile generic code on ppc64 and ppc64le 2019-10-11 21:20:28 -07:00
Patrick Gartung
d248b0e9d5 Fix python3 errors from string and byte concatenation (#13141) 2019-10-11 03:21:45 -05:00
Massimiliano Culpo
fd97f5c491 Fixed constraints in recipes for packages that depends on fftw (#13125) 2019-10-11 07:55:15 +02:00
Nichols A. Romero
884964d551 Fix f18 install method (#13123) 
* Install method is broken and not needed. Built-in install method works fine. Just delete.

* Change version to master.
 2019-10-10 21:52:29 -05:00
Tamara Dahlgren
93a44c822c tests: cleanup config:build_stage handling (fixes #12651, #12798) 2019-10-10 16:50:05 -07:00
Tamara Dahlgren
87cdfa2c25 Add support for nested "overrides" scopes. 2019-10-10 16:50:05 -07:00
Massimiliano Culpo
b07460ab5f Added NEON to the list of features required for the aarch64 family 
Both floating-point and NEON are required in all standard ARMv8
implementations. Theoretically though specialized markets can support
no NEON or floating-point at all. Source:

https://developer.arm.com/docs/den0024/latest/aarch64-floating-point-and-neon

On the other hand the base procedure call standard for Aarch64
"assumes the availability of the vector registers for passing
floating-point and SIMD arguments". Further "the Arm 64-bit
architecture defines two mandatory register banks: a general-purpose
register bank which can be used for scalar integer processing and
pointer arithmetic; and a SIMD and Floating-Point register bank".
Source:

https://developer.arm.com/docs/ihi0055/latest/procedure-call-standard-for-the-arm-64-bit-architecture

This makes customization of Aarch64 with no NEON instruction set
available so unlikely that we can consider them a feature of the
generic family.
 2019-10-10 16:24:36 -07:00
Massimiliano Culpo
77444dff10 ArchSpec: fix constraint satisfaction for targets 
fixes #13111

Due to a missing case we were treating a single target that was not
equal to the one we were comparing to as a range open on the right.
 2019-10-10 16:22:38 -07:00
Adam J. Stewart
7af8c206ac Add patches and missing dependency to bash (#13084) 2019-10-10 12:48:49 -05:00
Adam J. Stewart
c131a725af Add mpfr 4.0.2 (#13091) 2019-10-10 12:48:32 -05:00
Adam J. Stewart
06dffaefed Add tar 1.32 (#13099) 2019-10-10 12:48:16 -05:00
Jannek Squar
02564ef4ab sublime-text: New version, adapt install process (#13074) 
* Added new version, reworked installation process

* Removed explicit addition to PATH
 2019-10-10 12:13:00 -05:00
Adam J. Stewart
e925dbcefe Add expat 2.2.9 (#13085) 2019-10-10 12:10:48 -05:00
Adam J. Stewart
f940e8616c Add gettext 0.20.1 (#13086) 2019-10-10 12:10:19 -05:00
Adam J. Stewart
4d2b300da0 Add isl 0.21 (#13087) 2019-10-10 12:10:03 -05:00
Adam J. Stewart
15d7e2efd5 Add libiconv 1.16 (#13088) 2019-10-10 12:09:46 -05:00
Adam J. Stewart
c570c09cbf Add libsigsegv 2.12 (#13089) 2019-10-10 12:09:28 -05:00
Adam J. Stewart
db8178d99a Add latest openssl releases (#13092) 2019-10-10 12:09:02 -05:00
Adam J. Stewart
ace11d857f Add latest Perl releases (#13093) 2019-10-10 12:08:40 -05:00
Adam J. Stewart
f35c845330 Add pkgconf 1.6.3 (#13094) 2019-10-10 12:08:19 -05:00
Adam J. Stewart
0cf6980437 Add readline 8.0 (#13095) 2019-10-10 12:07:48 -05:00
Adam J. Stewart
4a5bdd1afd gdbm: https -> http (#13096) 2019-10-10 12:07:24 -05:00
Adam J. Stewart
01b87259e2 ncurses: https -> http (#13097) 2019-10-10 12:07:05 -05:00
Adam J. Stewart
f904e47c4e Add sqlite 3.30.0 (#13098) 2019-10-10 12:06:44 -05:00
Satish Balay
dd64bdc313 hypre: add compatibility patch for petsc/mfem build failures (#13116) 2019-10-10 09:11:15 -05:00
wspear
a042a7e91e Added new versions to py-tornado (#13080) 
* Added new versions to py-tornado

* Removed all but the latest new version
 2019-10-10 09:06:01 -05:00
Matthias Wolf
e69efded32 py-line-profiler: add 2.1.2, re-run cython if needed (#13102) 
* py-line-profiler: add 2.1.2, re-run cython if needed

See rkern/line_profiler#166.

* Update var/spack/repos/builtin/packages/py-line-profiler/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
 2019-10-10 11:34:50 +02:00
Rob Latham
d93cacfa5c libfabric: new upstream release 1.8.1 (#13053) 2019-10-09 22:24:17 -05:00
wspear
c8289fcd90 Added latest versions of SQLAlchemy 1.3.X, 1.2.X and 1.1.X (#13078) 
* Added latest versions of SQLAlchemy 1.3.X, 1.2.X and 1.1.X

* Added missing dependencies
 2019-10-09 22:23:55 -05:00
wspear
e7e67fdfec Added latest versions to py-traitlets (#13079) 
* Added latest versions to py-traitlets

* Added missing dependencies
 2019-10-09 22:23:33 -05:00
Francesco Di Natale
4ef64b64d1 Add new versions of py-maestrowf (#13081) 
* Addition of 1.1.3 and 1.1.4

* Addition of conditional enum-34 installation.

* Update var/spack/repos/builtin/packages/py-maestrowf/package.py

Addition of versioning for pyyaml.

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Addition of enum34 back to older versions 1.1.3 and below.
 2019-10-09 22:23:19 -05:00
Michael Kuhn
2e2b1a5e02 qt: Add 5.13.1 and missing zlib flags (#13109) 2019-10-09 22:22:52 -05:00
Patrick Gartung
5b879459c7 Buildcache: pass string.encode('utf-8') for old_dir and new_dir to replace_prefix_bin. (#13114) 
This should fix a Python3 error from concatenating strings and bytes.
 2019-10-09 20:36:47 -05:00
Michael Kuhn
469bef880a mysql: Add missing dependencies (#12717) 
This also changes the default for cxxstd from 98 to 14 because (at
least) newer versions of mysql do not compile with 98 (tested with
gcc@9).
 2019-10-09 14:45:31 -05:00
Massimiliano Culpo
acbb2af528 "No Spack mirror configured": demoted the warning to a debug message (#13082) 
fixes #12010
 2019-10-09 07:13:37 -05:00
Toyohisa Kameyama
b0bf528ab3 perl-perlio-gzip: add zlib dependency. (#13060) 2019-10-08 20:51:39 -05:00
Toyohisa Kameyama
529d0f3e37 psmc: add zlib dependency. (#13061) 2019-10-08 20:51:04 -05:00
Toyohisa Kameyama
f1e1693a6a seqprep: add zlib dependency. (#13062) 2019-10-08 20:50:51 -05:00
Toyohisa Kameyama
fdc91a1705 tabix: add zlib dependency. (#13064) 2019-10-08 20:48:37 -05:00
wspear
2e4bcf223c Added py-certipy package. Dependency of py-jupyterhub. (#13068) 
* Added py-certipy package. Dependency of py-jupyterhub.

* Changed url to pypi
 2019-10-08 20:48:11 -05:00
Nichols A. Romero
2794e52ddd QMCPACK Oct2019 fix buglets (#13069) 
* Support different CMake build types correctly.

* LIBXML2 variables no longer used.

* Fix E501 as part of https://github.com/spack/spack/pull/13069
 2019-10-08 20:46:15 -05:00
wspear
8de453af54 Fixed hash of version .0.5 and added latest version (.0.7.1) (#13077) 2019-10-08 20:43:44 -05:00
Mark Olesen
e3f69f8ce6 Build older openfoam (#13071) 
* adjust building of OpenFOAM 1806 and earlier

- spack now unpacks into spack-src, but earlier OpenFOAM versions
  still expect particular directory names (eg, OpenFOAM-v1806).

  Resolve by creating a symlink during patching.

* replace openfoam 1806 patch with URL version
 2019-10-08 20:42:44 -05:00
wspear
6a99b7e262 Added py-pamela package. Dependency of py-jupyterhub. (#13075) 2019-10-08 20:08:32 -05:00
George Hartzell
4377cc7066 Add headsup note re cryptsetup patch for v2.2.2 (#13076) 2019-10-08 20:07:38 -05:00
Massimiliano Culpo
1213aec7ed travis: bump python version for flake8 and build tests 2019-10-08 16:06:32 -07:00