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010e5761d6
Commit Graph

15610 Commits

Author SHA1 Message Date
Itaru Kitayama
010e5761d6
NEST package: add version @master; fix ~python (#23211) 2021-04-22 14:35:00 -07:00
estewart08
b0e4950555
[AMD] - rocm-openmp-extras 4.1 updates. (#22998) 
Update package with 4.1 sha keys.
Use variant to disable openmp in the build of llvm-amdgpu.
Set CPATH, LIBRARY_PATH so that clang knows to look in the rocm-openmp-extras for headers/libraries.
Disable flang warnings as Spack thinks they are errors.
In ROCm 4.1, the plugin changed names from hsa -> amdgpu.
Update HSA_INCLUDE for 4.1.0.
 2021-04-22 12:11:39 -07:00
Kelly (KT) Thompson
c3733771e4
Update patchfile to allow xl+cuda builds. (#23201) 2021-04-22 12:10:12 -06:00
Harmen Stoppels
b904e9aa1c
SIRIUS 7.2.1 (#23199) 2021-04-22 11:40:25 -06:00
Massimiliano Culpo
89ae2cb365
minisign: add v0.9 and v0.8 (#23202) 2021-04-22 10:31:56 -07:00
Frank Willmore
60c909cee5
prepend missing self. to spec (#23172) 2021-04-22 11:40:17 -05:00
Gregory Lee
7322a9e3be
boost: only apply boostrap-toolset.patch for version 1.75 (#23174) 2021-04-21 21:25:07 -06:00
Glenn Johnson
e0549f5e88
ncbi-rmblastn: add v2.11.0 (#22788) 2021-04-22 05:20:51 +02:00
Jen Herting
5bec197de1
New package: r-assertive-files (#23183) 
Co-authored-by: Alex Leute <acl2809@rit.edu>
Co-authored-by: Alex C Leute <aclrc@rit.edu>
 2021-04-21 17:24:22 -05:00
Jen Herting
ae045ac071
New package: r-assertive-matrices (#23184) 
Co-authored-by: Alex Leute <acl2809@rit.edu>
Co-authored-by: Alex C Leute <aclrc@rit.edu>
 2021-04-21 17:20:36 -05:00
Jen Herting
da520d7bb3
New package: r-assertive-datetimes (#23180) 
Co-authored-by: Alex Leute <acl2809@rit.edu>
Co-authored-by: Alex C Leute <aclrc@rit.edu>
 2021-04-21 17:18:45 -05:00
Harmen Stoppels
730fbae463
Disable multithreaded version of zstd by default (#23167) 
* Disable multithreaded version of zstd by default

* zstd pthreads by default again! but configurable, and turned off in GCC
 2021-04-21 22:17:08 +02:00
Jen Herting
ee76c329f8
New package: r-assertive-numbers (#23181) 
Co-authored-by: Alex C Leute <aclrc@rit.edu>
 2021-04-21 19:30:31 +00:00
Sergei Shudler
75fd886f62
MAGMA: Add e4s testsuite-inspired smoke test (#23011) 2021-04-21 11:12:59 -07:00
Massimiliano Culpo
d670f3aa40
lbann: remove deprecated variants in opencv (#23176) 2021-04-21 17:28:33 +00:00
Cameron Stanavige
0ea1b9705f
axl: add version 0.4.0 (#23044) 
* Swap .zip downloads with .tar.gz downloads (and update download
  hashes)
* New variants: intel_cppr and bbapi_fallback support
 2021-04-21 10:24:30 -07:00
Cameron Stanavige
44d995b6d5
unifyfs: add version 0.9.2 (#22390) 
UnifyFS has been integrated with updated versions of its mochi-margo
dependency (and mochi-margo's mercury and libfabric dependencies).

This removes support for version 0.9.0
 2021-04-21 10:20:41 -07:00
Harmen Stoppels
febeca2b05
Fix GCC with zstd on CCentOS 7 where it doesn't consider the lib64 directory (#23169) 2021-04-21 10:25:14 -06:00
Cyrus Harrison
a97ef832d9
conduit package: avoid issue with subclass case (#23156) 
* avoid issue with subclass case

* catch named exception
 2021-04-21 10:21:21 -05:00
Adam J. Stewart
8182994cee
OpenCV: overhaul package (#22340) 2021-04-21 03:01:04 -06:00
Brian Van Essen
4ee3934fb3
lbann: requirements of the new variants for the legacy versions (#23159) 
Fixed the range of conduit for legacy versions of LBANN.
 2021-04-20 18:33:05 -07:00
Brian Van Essen
fd9918ab6f
Removed unnecessary code to put cuda_arch in DiHydrogen (#23158) 
These were deprecated when the custom cuda_arch list was
removed.  Also fixed up the Aluminum dependencies for Hydrogen and
DiHydrogen.  Turns out that Aluminum v0.6.0 didn't have a correct
version in CMake and thus the interaction with older versions of
Hydrogen and DiHydrogen needed to be corrected.
 2021-04-20 16:54:12 -07:00
Mansour Moufid
73d1c0911c
libsigsegv: update to version 2.13. (#23155) 2021-04-20 22:39:10 +00:00
Ethan Stam
293c8bf621
Use xz instead of lzma. XZ utils provides lzma dev files (#23144) 2021-04-20 15:39:47 -04:00
Cameron Stanavige
5931995364
redset: add versions 0.0.5 and 0.0.4 (#22977) 
Also update the url and hash of v0.0.3.
 2021-04-20 12:04:58 -07:00
Cameron Stanavige
f4d8382a4f
shuffile: add version 0.0.4 (#22976) 
Also update the url and hash for v0.0.3.
 2021-04-20 12:03:58 -07:00
KoyamaSohei
fa06dbb324 New package: pmemkv 2021-04-20 11:52:36 -07:00
Sinan
d0dcde7c69
Package libsecret: turn off gobj variant by default (#23070) 
Co-authored-by: sbulut <sbulut@3vgeomatics.com>
 2021-04-20 11:49:05 -07:00
miheer vaidya
58789130a8
emacs package: add version @master (#23075) 2021-04-20 11:37:38 -07:00
Shintaro Iwasaki
a42c11ff0b
argobots: support new variants (#23133) 2021-04-20 18:23:30 +00:00
iarspider
0fec636bf4
oracle-instant-client package: add dependency on libaio (#23080) 2021-04-20 11:22:51 -07:00
Massimiliano Culpo
750fa8d810
etsf-io: added missing mpi variant (#23083) 
The variant was mentioned in a depends_on directive,
but never declared
 2021-04-20 11:21:30 -07:00
Massimiliano Culpo
67afe7016f
angsd: fix typo in variants (#23081) 2021-04-20 11:20:23 -07:00
Massimiliano Culpo
7dc9a0082b
geopm: remove reference to nonexistent variant (#23084) 2021-04-20 11:19:29 -07:00
Glenn Johnson
afd69866d1
New package: r-mcmcpack (#23139) 2021-04-20 11:17:49 -07:00
Glenn Johnson
25a9a40a12
New package: r-missmethyl (#23140) 2021-04-20 11:16:59 -07:00
Glenn Johnson
639d66720f
New package: r-projpred (#23141) 2021-04-20 11:15:40 -07:00
Massimiliano Culpo
8058aecd2a
lammps: fix typo in variant name (#23085) 
In two conflicts we used +adios instead of +user-adios
 2021-04-20 11:55:29 -06:00
Brian Van Essen
5461411f21
Set the minimum version of NCCL for aluminum (#23135) 2021-04-20 09:49:13 -07:00
Glenn Johnson
7925705d1d
r-experimenthub: new package (#23095) 2021-04-20 10:31:11 -06:00
Ryan Marcellino
f1d66b767d
add py-setuptools dependency (#23120) 2021-04-20 11:13:42 -05:00
Tom Payerle
0c0fa26b4c
New package: py-pymumps (#19526) 
* New package: py-pymumps

Python bindings for MUMPS, a parallel sparse direct solver

* py-pymumps: fixing flake issues

* py-pymumps: fix dependency types

Following suggestion of @adamjstewart

* Update var/spack/repos/builtin/packages/py-pymumps/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-pymumps/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-pymumps/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-pymumps/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-pymumps/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-pymumps/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2021-04-20 11:12:13 -05:00
Matthieu Dorier
448ac2c68d
json-c: added two versions and converted to cmake package (#23129) 2021-04-20 14:05:06 +02:00
Glenn Johnson
c10944e8fd
r-bayesplot: new package (#23091) 2021-04-20 11:36:48 +02:00
Glenn Johnson
e005250555
r-illuminahumanmethylation450kmanifest: new package (#23100) 2021-04-20 03:36:32 -06:00
Glenn Johnson
89838bae1d
r-champdata: new package (#23093) 2021-04-20 11:36:08 +02:00
Glenn Johnson
7b54389e12
r-compquadform: new package (#23094) 2021-04-20 11:35:47 +02:00
Glenn Johnson
5a3a014aae
r-illumina450probevariants-db: new package (#23099) 2021-04-20 03:35:30 -06:00
Glenn Johnson
cbf7ad8cc0
r-fastica: new package (#23096) 2021-04-20 11:35:03 +02:00
Glenn Johnson
80e60ceb91
r-gamm4: new package (#23097) 2021-04-20 11:34:38 +02:00