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15610 Commits

Author SHA1 Message Date
Glenn Johnson
7a224c583a
bcftools: add v1.12 (#22883) 2021-04-13 12:04:16 -06:00
Glenn Johnson
43ece950e5
htslib: add version 1.12 (#22882) 2021-04-13 10:56:48 -07:00
Harmen Stoppels
17ea01fbce
bump cmake (#22961) 2021-04-13 09:46:19 -07:00
Adam J. Stewart
af52b8e29e
py-pandas: add v1.2.4 (#22944) 2021-04-13 16:39:47 +00:00
Sreenivasa Murthy Kolam
6c632dad71
changes to enable rocm builds using git repo (#22943) 2021-04-13 15:36:34 +00:00
Harmen Stoppels
e7d392c49a
Fix issue where binutils builds ld with ~ld (#22959) 
Let's be very explicit and always add --enable or --disable.
 2021-04-13 16:31:44 +02:00
Matthieu Dorier
e320b1d7e4
berkeley-db: making +cxx and +stl default to True (#22960) 2021-04-13 13:18:28 +00:00
Simon Frasch
c11af21da2
spfft: add version 1.0.2 (#22958) 2021-04-13 13:35:37 +02:00
Harmen Stoppels
0b9bd92511
SIRIUS and SpFFT versions need ROCm < 4.1 (#22957) 
FindHIP.cmake script is not working for both 4.0 and 4.1.

It's fixed in their develop branches
 2021-04-13 11:58:19 +02:00
Tiziano Müller
1f1b568e95
spglib: fix libs property for some multilib distros (#22956) 
on multilib distros with lib/lib64 (rather than lib32/lib) the library ends up in a dir lib64/ instead of lib/, breaking the libs property (and the cp2k+spglib build)
 2021-04-13 11:01:15 +02:00
yellowhat
bff713aeb2
gcc: add v10.3 (#22894) 2021-04-13 08:14:43 +00:00
Jen Herting
85e70600ed
New package: r-tictoc (#22937) 2021-04-12 21:53:36 +00:00
Robert Mijakovic
a7d7f4e98a
vtk: new version, 9.0.1 (#22880) 
Co-authored-by: Robert Mijakovic <robert.mijakovic@lxp.lu>
 2021-04-12 15:52:07 -06:00
Jen Herting
62e256d995
New Package: r-assertive-types (#22933) 2021-04-12 21:48:13 +00:00
Harmen Stoppels
782a7dc690
Add new versions of patchelf (#22939) 2021-04-12 21:42:38 +00:00
Asher Mancinelli
e30aff9b6b
Bump hiop version (#22884) 2021-04-12 14:30:46 -07:00
Glenn Johnson
976cf4496b
samtools: add version 1.12 (#22885) 2021-04-12 14:28:04 -07:00
arjun-raj-kuppala
24f4a39d0e
ROCm relase 4.1.0: Bump up version of rocm-validation-suite (#22946) 2021-04-12 20:46:10 +00:00
Pramod Kumbhar
96c984e0ce
Add conflict for Mac OS for STAT package (#22919) 
See https://github.com/LLNL/STAT/issues/19
 2021-04-12 12:14:15 -07:00
jthies
087015e1ac
packages/phist: new version 1.9.4 (#22922) 
fix version 1.7.4 checksum
re 22758: phist-1.9.4 should resolve this issue, once confirmed I will add a patch for older versions.
 2021-04-12 11:18:01 -07:00
Axel Huebl
982d3abcfd
openPMD-api: 0.13.3 (#22910) 2021-04-12 18:10:52 +02:00
Glenn Johnson
0b472a91d1
maker: add v3.01.03 (#22915) 2021-04-12 11:15:03 +02:00
Chris White
edcd0703df
blt: add v0.4.0 (#22917) 2021-04-12 11:14:05 +02:00
Glenn Johnson
7c06b472f5
bart: update package (#22926) 
- add version 0.7.00
- make build work with intel-oneapi-mkl
- Add myself as maintainer
 2021-04-12 11:05:53 +02:00
Martin Pokorny
e3b0d7ce0e
casacore: change FFT variants for correct, version dependent, FFT choices (#22925) 
Required dependency on FFTW for casacore@3.4.0:; optional for
casacore@:3.4.0, depending selection of FFTPack
 2021-04-12 11:03:24 +02:00
Glenn Johnson
e27aa39427
mumax: constrain go version (#22927) 
Mumax will not build with go-1.16.
 2021-04-12 11:01:27 +02:00
Seth R. Johnson
b7f74f6ef6
qt: restrict python version when +webkit (#22928) 
See #17270.

```
make[2]: Entering directory `/tmp/vavolkl/spack-stage/spack-stage-qt-5.14.2-63dapppjbq6vqh3le7pazsprijls7cfl/spack-src/qtwebengine/src'
/bin/sh: -c: line 0: syntax error near unexpected token `('
/bin/sh: -c: line 0: `echo Modules will not be built. Python version 2 (2.7.5 or later) is required to build QtWebEngine.'
make[2]: *** [errorbuild] Error 1
```
 2021-04-12 11:00:32 +02:00
thelfer
9e702a3d44
tfel: add missing variant (#22558) 
The variant was used but not defined.
 2021-04-12 06:58:10 +00:00
Martin Pokorny
06f291a3cd
libsakura: Change precision for fftw dependency depending on libsakura version (#22924) 
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
 2021-04-12 08:38:18 +02:00
Sreenivasa Murthy Kolam
291a2b541b
fix 22802- fix incorrect arch list for rocblas (#22881) 2021-04-10 11:17:21 +02:00
Harmen Stoppels
391ab10337
Drop cxx berkeley-db (#22899) 2021-04-09 19:30:22 -07:00
Jen Herting
8d52200cbc
New package: r-ca (#22913) 
Co-authored-by: Alex C Leute <aclrc@rit.edu>
 2021-04-09 14:13:21 -06:00
Jen Herting
35ed2b26b5
New package: r-assertive-properties (#22914) 
Co-authored-by: Alex C Leute <aclrc@rit.edu>
Co-authored-by: Alex Leute <acl2809@rit.edu>
 2021-04-09 15:08:18 -05:00
Robert Mijakovic
9e6ef0e697
Flatbuffers: fixes for GCC 10+ (#22829) 2021-04-09 10:46:48 -07:00
Seth R. Johnson
ca5c2de517
swig: mark conflict and add maintainer (#22911) 
Closes #22407
 2021-04-09 17:38:49 +00:00
Olivier Cessenat
4d288a802e
New Package: STRIPACK (#22544) 2021-04-09 09:26:58 -07:00
Danny Taller
e21e26094e
CARE and dependencies fixed to work with +cuda (#22874) 2021-04-08 20:54:37 +00:00
Ryan Marcellino
1c5c53f505
new package: py-pytest-qt (#22878) 2021-04-08 15:07:28 -05:00
Maciej Wójcik
4adb76c4c5
Gromacs CUDA patch + some version constraints (#22851) 2021-04-08 09:52:41 -07:00
darmac
4807956977
py-mo-pack: add LDFLAGS to fix build error (#22747) 2021-04-08 11:06:57 -05:00
darmac
8a0aec4c4d
py-pyfftw: add LDFLAGS to fix build error (#22745) 2021-04-08 11:06:23 -05:00
Jen Herting
44d2444854
openal-soft: new package (#22265) 2021-04-08 16:55:45 +02:00
lpoirel
0ecce5797e
petsc: forward +metis to mumps (#21291) 
Co-authored-by: lpoirel <lpoirel@users.noreply.github.com>
 2021-04-08 16:50:58 +02:00
darmac
e0f810956c
libmcrypt: new package (#22144) 2021-04-08 16:48:47 +02:00
Robert Pavel
f27fefc3c1
Exodusii: added versions up to v2021-04-05 (#22819) 
Fixed previously unspecified python dependency and ensured that spack's
python is what exodus@v2016 uses. Also, in the process, identified many
missing versions
 2021-04-08 16:36:41 +02:00
Robert Mijakovic
7170c666a0
hpctoolkit: fix for GCC 10 (#22864) 
Co-authored-by: Robert Mijakovic <robert.mijakovic@lxp.lu>
 2021-04-08 08:31:17 -06:00
Tomoyasu Nojiri
a0f9ffd80c
manta: make it build on aarch64 (#22630) 2021-04-08 16:16:30 +02:00
Cyrus Harrison
68cec598dc
glfw: make it build on MacOS (#22626) 2021-04-08 14:14:14 +02:00
Harmen Stoppels
65563946e3
squashfs: ensure we install with required options (#22863) 
Currently the make install step uses the default variables, which causes
things to rebuild with default options.
 2021-04-08 14:11:40 +02:00
lorddavidiii
5b77046e20
ncurses: add determine_variants for abi version (#22647) 2021-04-08 14:10:36 +02:00
iarspider
da88c0e6ff
Add slightly older version of Oracle Instant Client (#22862) 2021-04-08 13:59:42 +02:00
darmac
70e132dd9a
collectd: add v5.12.0 (#22746) 
Changed url to use release tarball instead of repo snapshot
as this permits to drop build deps
 2021-04-08 13:47:55 +02:00
Adam J. Stewart
cca5f260e5
py-python-certifi-win32: add new package (#22843) 2021-04-08 13:33:04 +02:00
Filippo Spiga
5500eed60c
NVHPC: add v21.3 (#22860) 2021-04-08 09:06:53 +00:00
Scott McMillan
30153b1064
tar: make it build with nvhpc (#22853) 
Co-authored-by: Scott McMillan <smcmillan@nvidia.com>
 2021-04-08 10:57:05 +02:00
Scott McMillan
2a7f588612
kim-api: support the NVIDIA compiler (#22857) 
Co-authored-by: Scott McMillan <smcmillan@nvidia.com>
 2021-04-08 10:55:32 +02:00
Adam J. Stewart
e38aac8cb6
py-wincertstore: add new package (#22844) 2021-04-08 02:55:10 -06:00
Glenn Johnson
8246e4dde0
Patch to fix mariadb and mariadb-c-client packages for cmake-3.20 (#22854) 2021-04-08 10:50:17 +02:00
Vicente Bolea
f1f5f9bf5b
vtkm: add v1.6.0-rc1, make v1.5.1 preferred (#22855) 
Signed-off-by: Vicente Adolfo Bolea Sanchez <vicente.bolea@kitware.com>
 2021-04-08 10:45:05 +02:00
Dr. Christian Tacke
7e17fb1ae1
root: add conflict with intel-oneapi-tbb (#22850) 
As originally noted, ROOT 6.22 does not work with intel's
TBB >= 2021.1. So we need to also conflict with the newer
package (intel-oneapi-tbb)
 2021-04-08 10:38:46 +02:00
Sreenivasa Murthy Kolam
43bdbc8234
bumpup version for rocm-debug-agent,rocprofiler,rocsolver for rocm-4.… (#22722) 2021-04-07 21:16:56 +00:00
Kelly (KT) Thompson
33bcc0ac89
[package][new version] Provide draco-7.10.0. (#22846) 2021-04-07 21:03:46 +00:00
Sreenivasa Murthy Kolam
56418bac39
bump up version for rccl for rocm-4.1.0 release (#22762) 2021-04-07 22:55:20 +02:00
Adam J. Stewart
77a211dc46
py-requests-ntlm: add new package (#22842) 2021-04-07 13:53:58 -07:00
Dan Bonachea
f89b5e1e84
Add new UPC++ release version (#22849) 2021-04-07 20:36:45 +00:00
Martin Pokorny
355b7787d4
Remove ~mpi variant from fftw dependency (#22848) 2021-04-07 13:27:42 -07:00
Adam J. Stewart
e349ae26fc
py-ntlm-auth: add new package (#22841) 2021-04-07 12:25:22 -07:00
Asher Mancinelli
f365cb4535
Add ExaGO develop branch (#22847) 2021-04-07 18:48:35 +00:00
Robert Mijakovic
9c86e919cd
FFTW: update pfftw patch for FFTW 3.3.9 (#22801) 2021-04-07 11:23:07 -07:00
Glenn Johnson
e9c4123f97
Merge py-uproot4 into py-uproot (#22831) 2021-04-07 13:20:36 -05:00
Adam J. Stewart
995b6556c9
py-lerc: add new package (#22839) 2021-04-07 11:15:26 -07:00
Adam J. Stewart
868bc1db0a
py-keyring: add new package (#22838) 2021-04-07 11:07:05 -07:00
Adam J. Stewart
86055cdbdd
py-ujson: add new version (#22835) 2021-04-07 11:03:39 -07:00
Adam J. Stewart
ae43ecc7ba
ImageMagick: specify how to find libraries (#22833) 2021-04-07 10:50:37 -07:00
Adam J. Stewart
e14e6fbbd2
py-importlib-metadata: add new version (#22836) 2021-04-07 10:46:01 -07:00
Erik Schnetter
db0f181ec1
New package: mmv (#22815) 2021-04-07 10:44:00 -07:00
Robert Mijakovic
64d8e4f5ad
R: new version, 4.0.5 (#22840) 
Co-authored-by: Robert Mijakovic <robert.mijakovic@lxp.lu>
 2021-04-07 10:41:13 -07:00
Erik Schnetter
c843a5b585
ssht: New versions 1.3.6, 1.3.7 (#22832) 2021-04-07 11:40:10 -06:00
Glenn Johnson
ef188a1e12
new package: gatetools (#22659) 
* new package: gatetools

This PR adds the gatetools package and dependencies. The gatetools
package is a set of command line tools for gate. Since it is primarily a
CLI, although python modules can be loaded, it is named gatetools as
opposed to py-gatetools.

* Fix quote characterss to avoid test error

* Found another UTF8 character that was tripping up tests

* Another UTF-8 character to replace

* Remove py-python-box dependency and package file

* Make numpy a variant

- py-setuptools needs to be a run dependendency
  This was masked by py-numpy having py-setuptools as a run dependency.

* Add missing build depency on py-pytest-runner
 2021-04-07 17:39:53 +00:00
Glenn Johnson
7c87ebeb91
Some improvements to gate package (#22656) 
- set constraint for geant4 to version 10.6 as gate does not work with
  geant-10.7+
- set GATE_USE_ITK: Although RTK is built under ITK, there are some ITK
  macros that need to be set explicitly.
 2021-04-07 12:13:05 -05:00
Sergey Kosukhin
253c0d0ebb
hdf5: avoid compilation with -I/usr/include (#22808) 2021-04-07 09:49:16 -07:00
Vasily Danilin
ccc90e3a79
Integrate oneAPI 2021.2.0 release (#22821) 2021-04-07 09:44:12 -07:00
Robert Cohn
c8b4414230
[oneapi] fix mkl deps, externally installed, and docs (#22607) 2021-04-07 10:31:08 -06:00
Evili del Rio
6c16f5c5d5
Py py spy add libunwind 1 (#22827) 
* Add missing libunwarp dependency

py-py-spy fails to build with:
  = note: /bin/ld: cannot find -lunwind
          /bin/ld: cannot find -lunwind-ptrace
          /bin/ld: cannot find -lunwind-x86_64
          collect2: error: ld returned 1 exit status

* Correct libunwind instead of libunwarp

* Change libunwind dependency to unwind
 2021-04-07 16:10:08 +00:00
Evili del Rio
cfbb4abb79
Update package.py (#22826) 2021-04-07 10:44:02 -05:00
Mosè Giordano
ad3eb98c4b
libblastrampoline: Add version 3.0.4 (#22830) 2021-04-07 15:33:27 +00:00
Cameron Rutherford
c4a83aa22c
Create ExaGO Package (#22734) 
Co-authored-by: Asher Mancinelli <asher.mancinelli@pnnl.gov>
 2021-04-07 13:48:46 +02:00
Julius-Plehn
41ed95dbdf
iozone: adds 3.491 and fixes permissions (#22817) 2021-04-07 12:15:21 +02:00
Severin Strobl
b7d72e26bb
otf2: patch for uninitialized variable (#22719) 
As pointed out in https://github.com/STEllAR-GROUP/hpx/issues/5239,
there is an issues in OTF2 <=2.2 where a variable is not properly
initialized. As currently no release of OTF2 is available fixing this,
the patch should be applied.
 2021-04-07 11:55:24 +02:00
Vasileios Karakasis
58edc361be
ReFrame: add v3.5.1 and v3.5.2 (#22820) 2021-04-07 09:06:34 +00:00
Scott McMillan
51ac05483d
Update packages for NVIDIA HPC SDK 21.1 (#21975) 
Co-authored-by: Scott McMillan <smcmillan@nvidia.com>
 2021-04-07 09:41:43 +02:00
arjun-raj-kuppala
c188575cfe
roctracer-dev: add v4.1.0 (#22812) 2021-04-07 09:26:01 +02:00
Harmen Stoppels
3caf531f04
Add libxc 5.1.3 (#22816) 2021-04-07 09:23:26 +02:00
Brian Van Essen
4d417dcf2d
lbann: remove the specification of the high performance linkers (#22818) 
Allow the user to put them on the command line.
 2021-04-07 09:14:06 +02:00
archxlith
97d237dafa
py-scikit-image: add new version (#22363) 
* [py-scikit-image] Added py-setuptools back into depends_on. Otherwise it is putting skimage in scikit_image-version-pyX.Y-arch.egg dir under site-packages

* [py-scikit-image] Added latest version

* [py-scikit-image] Added py-numpy version dependency when package version greater than 0.18

* [py-scikit-image] Updates to python dependency

* Fix typo

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2021-04-07 03:32:38 +00:00
Adam J. Stewart
dbdb72d0ea
py-statsmodels: add v0.12.2 (#22620) 2021-04-06 14:44:33 -07:00
Robert Mijakovic
50f5ec7abf
valgrind: add version 3.17.0 (#22752) 2021-04-06 13:57:48 -07:00
iarspider
0166f7db08
New package: Oracle instant client (#22797) 2021-04-06 13:56:33 -07:00
darmac
23422dcc59
tcpdump: add version 4.99.0 (#22803) 2021-04-06 13:33:43 -07:00
Xavier Delaruelle
9505af42ff
environment-modules: add version 4.7.1 (#22811) 2021-04-06 20:23:01 +00:00
Desmond Orton
838bba70c6
salmon: New patch (#22686) 2021-04-06 12:37:32 -07:00
Glenn Johnson
442241d477
new package: py-python-box (#22814) 2021-04-06 14:36:53 -05:00
Harmen Stoppels
a989521052
Squashfuse: Enable or disable static and shared libs, and allow min size builds too, useful for appimages (#22669) 
* Enable or disable static and shared libs, and allow min size builds too, useful for appimages

* Fix master version
 2021-04-06 14:00:32 -05:00
Jen Herting
a4c3bc9893
New package: py-ilmbase (#22783) 
* [py-ilmbase] created template

* [py-ilmbase] added dependencies and configuration options as necessary

* [py-ilmbase] added homepage and description removed fixmes

* [py-ilmbase] shortened lines for flake8
 2021-04-06 09:55:40 -05:00
Robert Mijakovic
b6668a1146
paraview: adds new cuda target, ampere (#22750) 
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
 2021-04-06 16:54:35 +02:00
Seth R. Johnson
1ed44f20f2
m4: force path where to look for autoconf (#22765) 
Uses the M4 environment variable
 2021-04-06 10:21:38 +00:00
Michael Kuhn
85cdb3d250
xfsprogs: add 5.11.0 and fix build with newer versions of gcc (#22665) 
xfsdump depends on an older version of xfsprogs that does not build with
recent versions of gcc.
 2021-04-06 11:21:48 +02:00
ravil-mobile
8b4cf24ba7
hipsycl: add v0.9.1 which partially implements SYCL 2020 standard (#22770) 
Co-authored-by: ravil <ravil.dorozhinskii@tum.de>
 2021-04-06 11:21:05 +02:00
Gregory Lee
5b1fa20f87
stat: deprecate versions prior to 4.0 (#22650) 2021-04-06 11:16:54 +02:00
Sergey Kosukhin
47c13bc6ca
cdo: help libtool to find the correct paths to libraries (#22670) 
- Add a maintainer
- Help libtool to find the correct paths to libraries
- Handle externals from system directories
- Enable eccodes for older versions
 2021-04-06 11:15:29 +02:00
Gilles Grospellier
fbed5d1eb5
dotnet-core-sdk: add v5.0.4 and v3.1.13. (#22217) 2021-04-06 03:06:50 -06:00
Glenn Johnson
a586b8df20
itk: add v5.1.2 (#22655) 2021-04-06 11:03:53 +02:00
Harmen Stoppels
d2bf74242e
libtree: add v1.2.1 (#22795) 2021-04-06 09:01:08 +00:00
Thomas Gruber
cac8646e1c
likwid: add v5.1.1 (#22672) 2021-04-06 10:59:38 +02:00
Robert Mijakovic
f9837d8c66
qwt: add v6.1.6 (#22713) 
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
 2021-04-06 10:45:09 +02:00
Robert Mijakovic
1424dc6147
rdma-core: add v34.0 (#22710) 
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
 2021-04-06 10:44:46 +02:00
darmac
239be21391
libpcap: add v1.10.0, v1.9.1 (#22741) 2021-04-06 10:31:15 +02:00
darmac
4668f34682
capnproto: add v0.8.0 (#22743) 2021-04-06 10:23:49 +02:00
Robert Mijakovic
8c5f4c9c94
spark: add v3.1.1, v3.0.2, v3.0.2, v2.4.7 (#22753) 
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
 2021-04-06 10:14:28 +02:00
Tiziano Müller
d0a2e354bb
anaconda3: add v2020.11 (#22576) 2021-04-06 10:02:57 +02:00
Jen Herting
91bd16a850
r-assertive-base: new package (#22780) 
Co-authored-by: Alex C Leute <aclrc@rit.edu>
 2021-04-06 09:46:06 +02:00
Amiya Maji
7e6386803e
fltk: add explicit dependency on gl and a variant to activate it (#22761) 
* The fltk package can build libraries with opengl support. By default, the configure script looks for opengl headers in the sytem include paths. If 'devel' packages have not been installed on the system it omits the 'ftlk_gl.so' library. This can break packages like 'octave' which expects 'fltk' to have opengl support and looks for the library 'fltk_gl'.

Make opengl support explicit in fltk by adding a dependency on 'gl' and adding a new variant of the same name 'gl' (default On).

With these modifications 'fltk_gl' and 'octave' build successfully on CentOS8.

The default behavior is to always enable opengl.

https://www.fltk.org/doc-1.3/intro.html
 2021-04-06 09:45:00 +02:00
Greg Sjaardema
8dab9f0a81
seacas: add v2021-04-05 (#22784) 2021-04-06 09:41:11 +02:00
Andrew W Elble
a57f56c5b9
openmpi: allow to build with ^slurm ~pmi for >3.0.0 with PMIx (#22086) 2021-04-06 09:40:33 +02:00
Brian Van Essen
023524365c
hydrogen, lbann: forward the CXXFLAGS to the HIP_HIPCC_FLAGS variable. (#22744) 2021-04-06 09:38:37 +02:00
Harmen Stoppels
802f4d9ffa
zstd: add v1.4.9, switch to cmake to configure more easily (#22668) 
Also:
- Add variants to control the build
- Add a maintainer
- Add master version
 2021-04-06 09:37:08 +02:00
Robert Mijakovic
fc5a50aa83
hdf5: patch for BOZ literal constant error when compiled with GCC 10. (#22509) 2021-04-06 01:13:11 -06:00
Seth R. Johnson
26c7f02873
doxygen: add version restriction (#22773) 
This triggered on my mac because clingo seems to have bootstrapped a
very old version distributed by apple.
 2021-04-06 09:09:01 +02:00
Andrew W Elble
e5c7723276
stress-ng: new package (#22777) 2021-04-06 09:07:56 +02:00
Harmen Stoppels
eb6f4c740b
Add patch for latest hwloc@:1 to locate ncurses (#22776) 
* Add patch for latest hwloc@:1 to locate ncurses

This way we don't have to depend on ncurses~termlib, which may run into
issues when another package explicitly depends on ncurses+termlib

* Move termcap to the back, cause it's a system symlink on macos and isn't set by spack
 2021-04-06 09:00:22 +02:00
Andrew W Elble
6e48e29c75
gpu-burn: add v1.1 and "master" (#22778) 2021-04-06 08:57:03 +02:00
Desmond Orton
1c0230f7d0
rnaquast: add new package (#22648) 2021-04-06 08:49:58 +02:00
Glenn Johnson
65b03a9f03
trf: add v4.09.1 and other updates (#22782) 
- add new version, 4.09.1
- use github url
- convert to autotools package
- deprecate version 4.07b: This version requires manual download and is
  a binary only installation.
 2021-04-06 08:48:04 +02:00
Glenn Johnson
6df1b509fa
repeatmasker: update and fix package (#22785) 
- version 4.0.7 was not building
- version 4.0.9 was not setting search correctly due to an extra "return"
  in config
- added version 4.1.2-p1
- new version needs py-h5py
- new version does not need utf8 patch
- url format changed
 2021-04-06 08:35:51 +02:00
Glenn Johnson
a4f19853b8
hmmer: add v3.3.2 (#22787) 2021-04-06 08:26:22 +02:00
Andrew W Elble
b924440f79
exabayes: add v1.5.1 (#22789) 2021-04-06 08:11:48 +02:00
Axel Huebl
c1cf643780
libfabric: add v1.12.1 (#22790) 
Add latest patch release to fix build issues with unconditional
usage of `infiniband/ib.h`
 2021-04-06 07:06:01 +02:00
Valentin Volkl
1908e6834d
qt: backport build issue fix on 5.14 due to isystem (#22772) 2021-04-04 09:55:42 -04:00
Cameron Stanavige
bfb3b55414
rankstr: add v0.0.3 (#22763) 2021-04-03 21:11:37 +02:00
Jen Herting
3a36ca4b36
New package: r-anytime (#22624) 
Co-authored-by: Alex C Leute <aclrc@rit.edu>
 2021-04-02 21:09:50 -05:00
Jen Herting
b51363e0ac
New package: r-pheatmap (#22617) 
Co-authored-by: Alex C Leute <aclrc@rit.edu>
 2021-04-02 20:57:09 -05:00
Jen Herting
0d4e0b8198
New package: r-amelia (#22623) 
Co-authored-by: Alex C Leute <aclrc@rit.edu>
 2021-04-02 20:54:29 -05:00
Desmond Orton
76b54816cf
New package py-gffutils (#22552) 2021-04-02 22:33:20 +02:00
Axel Huebl
2dbaf23fca
Ascent: CUDA ~shared (#22760) 
Add a conflict for CUDA and shared libraries in Ascent.
The new concretizer will automatically change the default for
Ascent in that case. Until then, dependencies like WarpX need
to hint the `~shared` wish explicitly.
 2021-04-02 12:16:27 -07:00
Axel Huebl
5a75f7e0d6
WarpX: 21.04 (#22740) 
Update WarpX: add first tagged version.
 2021-04-02 14:37:56 -04:00
Robert Mijakovic
d978d72e19
py-wheel: new version (#22751) 
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
 2021-04-02 09:56:16 -05:00
iarspider
9f90659aa7
igprof: new package (#22666) 2021-04-02 15:41:58 +02:00
darmac
d528ff6e5a
sandbox: add build dependency on gawk (#22748) 2021-04-02 14:45:05 +02:00
Thilina Rathnayake
bbaf6e05d2
nekRS: new package (#22519) 
This initial package recipe uses a custom-built wrapper to drive an internal CMake file. Since nekRS also includes built-in copies of several dependencies such as BLAS and HYPRE, it cannot be linked with other such dependencies. However, to work with the `ceed` metapackage, we cannot add `^blas` conflicts to nekRS.

See https://github.com/spack/spack/pull/22519 for discussion.
 2021-04-02 07:50:31 -04:00
Chris White
45c616529c axom: convert to Cached CMakePackage 
This updates axom to use the new CachedCMakePackage superclass.

Co-authored-by: Greg Becker <becker33@llnl.gov>
 2021-04-01 20:06:39 -07:00
Todd Gamblin
fc48c63355 Revert "CachedCMakePackage for using *.cmake initial config files (#19316)"" 
This reverts commit 7daf582357.
 2021-04-01 20:06:39 -07:00
Robert Pavel
3f7c111e29
Added ML Suite to ECP Proxy App Suite (#22728) 2021-04-01 17:52:17 -07:00
Shintaro Iwasaki
7e6048fef5
argobots: add Argobots 1.1 and 1.0.1 (#22729) 2021-04-01 18:49:11 -06:00
Jose E. Roman
49b222442f
Update SLEPc and slepc4py to version 3.15 (#22714) 
Co-authored-by: Satish Balay <balay@mcs.anl.gov>
 2021-04-01 17:38:47 -07:00
AMD Toolchain Support
252f42f115
Fix for static library export issue in blis package (#22673) 2021-04-01 16:57:46 -07:00
Amiya Maji
73a4a5d394
gdal package needs to import the 'os' module (#22731) 
* 'gdal+java' build needs to import the 'os' module (line 191).

* Make style-check happy.
 2021-04-01 17:52:04 -06:00
Michael Kuhn
c89fa98b16
Fix pkgconfig dependencies (#22702) 
pkgconfig is the correct virtual provider.
 2021-04-01 23:45:01 +00:00
Simon Bolding
9c139bf7a2
mpark-variant: ICC Patch (#22727) 
* Add patch for Intel C++ compiler

- On some machines (in particular MacOSX Catalina), the icpc in some way
utilizes the preprocessor of the associated "developer tools" used by
icpc. This leads to, in some cases, a preprocessor claiming support for
__tuple_element_packs, even though icpc (as of version 21.1) can't
actually parse such code. Just use the MPARK_TUPLE_ELEMENT_PACK impl
with __icc until icpc supports it, to avoid issues with developer tools
that are untested.
- The same patch has been PRed against mpark-variant
 2021-04-01 23:15:25 +00:00
mic84
2ae7e25501
amrex: new version 21.04 (#22730) 2021-04-01 14:11:14 -07:00
Daniel Arndt
cf1b8dd72b
xSDK: add ArborX (#22619) 2021-04-01 11:59:05 -05:00
iarspider
1e70ee38a2
New version of OpenLoops (#22240) 
New version of OpenLoops; new list of processes; update lcg process collection
Add script to scrape openloops website for process list
 2021-04-01 17:06:03 +02:00
Nick Forrington
e22b2ff5c9
arm-forge: cleanup and upgrade to forge v21.0 (#22015) 
Backwards incompatible cleanup to target single-tarball-per-arch builds
going forwards.

* Replace per-distro versions with new per-arch builds, and add
  url_for_version to avoid specifying per tarball.
* Customise environment setup to avoid adding lib to LD_LIBRARY_PATH.
* Update homepage and licensing URLs.
* Avoid shell interpretation when running textinstall.sh.
* Added NickRF as maintainer.
 2021-04-01 15:47:32 +02:00
iarspider
034211f993
Extra environment variables for Qt (#22717) 2021-04-01 12:40:56 +00:00
Chris Richardson
5ed00560cd
Fenicsx package updates for basix install (#22679) 
Co-authored-by: Garth N. Wells <gnw20@cam.ac.uk>
 2021-04-01 14:35:01 +02:00
Robert Mijakovic
efaa2c160f
py-cython: new version (#22712) 
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
 2021-04-01 14:28:12 +02:00
William Downs
db87f62aa5
gchp: add version 13.0.1 and remove release candidate (#22572) 2021-04-01 14:07:13 +02:00
Rémi Lacroix
67f182bb6d
MUMPS: Various improvements to the package (#22575) 
Use `conflicts` directive whenever possible.
This allows failing early when conflicting variants are used.

Do not silently ignore `+parmetis` variant when `~metis`.
Instead throw an error during concretization.

Simplify the "Makefile.inc" generation.
This will make easier to add new variants in the future.
 2021-04-01 14:06:22 +02:00
Michael Kuhn
4a059aad17
libfabric: add 1.12.0 (#22694) 2021-04-01 06:01:19 -06:00
Michael Kuhn
76424c1a91
sqlite: add 3.35.3 (#22697) 2021-04-01 13:57:20 +02:00
Michael Kuhn
2556490cb0
leveldb: add 1.23 (#22695) 2021-04-01 13:56:25 +02:00
Michael Kuhn
5a10c6f822
glib: add 2.66.8 (#22691) 2021-04-01 13:44:09 +02:00
Amiya Maji
09dcb16a70
qt: restrict patch to 5.12.7 (#22705) 2021-04-01 04:38:06 +00:00
Michael Kuhn
bfece29858
pkgconf: add 1.7.4 (#22696) 2021-03-31 21:37:02 -07:00
Michael Kuhn
f7d7cbfacf
readline: add 8.1 (#22698) 2021-03-31 21:36:40 -07:00
Michael Kuhn
487ea02044
tar: add 1.34 (#22700) 2021-03-31 21:36:20 -07:00
Michael Kuhn
2922068fdc
curl: add 7.76.0 (#22693) 2021-03-31 21:36:01 -07:00
Anthony J. Zukaitis
1c084cd4dd
Added version patch for 1.4.0 tag on mpark-variant (#22496) 
* Added version patch for 1.4.0 tag on mpark-variant

Redirected urls to git and github tags.

* Updated to commit hashes

* Update var/spack/repos/builtin/packages/mpark-variant/package.py

Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>

* Update var/spack/repos/builtin/packages/mpark-variant/package.py

Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>

* Update var/spack/repos/builtin/packages/mpark-variant/package.py

Co-authored-by: Anthony J Zukaitis <zukaitis@lanl.gov>
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
 2021-03-31 22:35:00 -06:00
Michael Kuhn
4f2a972c2f
util-linux(-uuid): add 2.36.2 (#22701) 2021-03-31 21:32:07 -07:00
takanori-ihara
3e532db04d
fujitsu-ssl2: Add the headers method (#22629) 
* fujitsu-ssl2: Add the headers method

* fujitsu-ssl2: Fix for comments

* fujitsu-ssl2: Fix for comments
 2021-04-01 03:59:10 +00:00
Greg Becker
7daf582357 CachedCMakePackage for using *.cmake initial config files (#19316)" 
Original commit message:
This feature of CMake allows packages to increase reproducibility, especially between
Spack- and manual builds. It also allows packages to sidestep certain parsing bugs in
extremely long ``cmake`` commands, and to avoid system limits on the length of the
command line.

Adding:
Co-authored by: Chris White <white238@llnl.gov>

This reverts commit c4f0a3cf6c.
 2021-03-31 18:38:22 -07:00
Chris White
c4f0a3cf6c Revert "CachedCMakePackage for using *.cmake initial config files (#19316)" 
This reverts commit 764c170530.
 2021-03-31 18:34:45 -07:00
Sreenivasa Murthy Kolam
3b59af8b2b
Changes to packages for rocm-4.1.0 release (#22687) 2021-04-01 00:30:56 +00:00
Greg Becker
764c170530
CachedCMakePackage for using *.cmake initial config files (#19316) 
CachedCMakePackage is a specialized class for packages built using CMake initial cache.

This feature of CMake allows packages to increase reproducibility, especially between
Spack- and manual builds. It also allows packages to sidestep certain parsing bugs in
extremely long ``cmake`` commands, and to avoid system limits on the length of the
command line.
 2021-03-31 23:55:19 +00:00
Satish Balay
6242f102fb
petsc@3.15.0, py-petsc4py@3.15.0 (#22688) 
* petsc@3.15.0, py-petsc4py@3.15.0

* Update var/spack/repos/builtin/packages/petsc/package.py

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
 2021-03-31 23:04:23 +00:00
Asher Mancinelli
3205c6f940
Bump HiOp version to v0.4 (#22689) 2021-03-31 22:50:14 +00:00
Adam J. Stewart
315124e219
py-matplotlib: add v3.4.1 (#22680) 2021-03-31 16:01:16 -06:00
Rémi Lacroix
bb60dbd2ad
OpenFOAM-org: Add version 2.3.1. (#22473) 2021-03-31 23:19:37 +02:00
Rémi Lacroix
772dd7bcb2
Molden: Add new versions (#22685) 
Fix the download URL and add new versions.
 2021-03-31 13:28:06 -07:00
Scott McMillan
25747a037a
Do not set CPATH in nvhpc package (#22652) 
Co-authored-by: Scott McMillan <smcmillan@nvidia.com>
 2021-03-31 12:19:17 -06:00
Jungwon Kim
2196c24e97
papyrus: setup environment variables #22681 (#22682) 2021-03-31 11:08:18 -07:00
kurtsansom
904867703e
fix: modify for change in meson options (#22678) 2021-03-31 11:25:18 -06:00
Glenn Johnson
1ed7762327
new package: py-uproot (#22658) 2021-03-31 10:57:34 -05:00
Michael Kuhn
bee9e34b50
wget: add 1.21 (#22675) 2021-03-31 10:55:15 -05:00
AMD Toolchain Support
1144666c09
AOCC support for QE 6.7 (#22664) 
Adding qe_6.7_aocc_support
 2021-03-31 09:34:21 -06:00
yellowhat
802f5afac0
hpl: FIX ^intel-oneapi-mkl (#22674) 2021-03-31 08:17:27 -07:00
AMD Toolchain Support
9a453b2e74
adding AOCC support for CP2K 7.1 (#22641) 2021-03-31 13:22:04 +02:00
Harmen Stoppels
fa6e30c6a7
squashfuse: add v0.1.104 and variants (#22605) 2021-03-31 10:17:35 +02:00
Harmen Stoppels
64d4ab85e7
There is no symlink fusermount->fusermount3 by default (#22638) 2021-03-30 14:05:37 -07:00
Rémi Lacroix
2747af6000
SRILM: Add new package. (#22640) 2021-03-30 20:53:31 +00:00
Desmond Orton
c57a74e3b0
New package py-flexmock (#22549) 
* New package py-flexmock

* Switched to proper deps

* Changed setuptools type
 2021-03-30 14:49:07 -06:00