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Author SHA1 Message Date
Glenn Johnson
976cf4496b samtools: add version 1.12 (#22885) 2021-04-12 14:28:04 -07:00
arjun-raj-kuppala
24f4a39d0e ROCm relase 4.1.0: Bump up version of rocm-validation-suite (#22946) 2021-04-12 20:46:10 +00:00
Pramod Kumbhar
96c984e0ce Add conflict for Mac OS for STAT package (#22919) 
See https://github.com/LLNL/STAT/issues/19
 2021-04-12 12:14:15 -07:00
jthies
087015e1ac packages/phist: new version 1.9.4 (#22922) 
fix version 1.7.4 checksum
re 22758: phist-1.9.4 should resolve this issue, once confirmed I will add a patch for older versions.
 2021-04-12 11:18:01 -07:00
Axel Huebl
982d3abcfd openPMD-api: 0.13.3 (#22910) 2021-04-12 18:10:52 +02:00
Peter Scheibel
51df9b0c9c Externals with merged prefixes (#22653) 
We remove system paths from search variables like PATH and 
from -L options because they may contain many packages and
could interfere with Spack-built packages. External packages 
may be installed to prefixes that are not actually system paths 
but are still "merged" in the sense that many other packages are
installed there. To avoid conflicts, this PR places all external
packages at the end of search paths.
 2021-04-12 11:19:29 +02:00
Glenn Johnson
0b472a91d1 maker: add v3.01.03 (#22915) 2021-04-12 11:15:03 +02:00
Chris White
edcd0703df blt: add v0.4.0 (#22917) 2021-04-12 11:14:05 +02:00
Glenn Johnson
7c06b472f5 bart: update package (#22926) 
- add version 0.7.00
- make build work with intel-oneapi-mkl
- Add myself as maintainer
 2021-04-12 11:05:53 +02:00
Martin Pokorny
e3b0d7ce0e casacore: change FFT variants for correct, version dependent, FFT choices (#22925) 
Required dependency on FFTW for casacore@3.4.0:; optional for
casacore@:3.4.0, depending selection of FFTPack
 2021-04-12 11:03:24 +02:00
Glenn Johnson
e27aa39427 mumax: constrain go version (#22927) 
Mumax will not build with go-1.16.
 2021-04-12 11:01:27 +02:00
Seth R. Johnson
b7f74f6ef6 qt: restrict python version when +webkit (#22928) 
See #17270.

```
make[2]: Entering directory `/tmp/vavolkl/spack-stage/spack-stage-qt-5.14.2-63dapppjbq6vqh3le7pazsprijls7cfl/spack-src/qtwebengine/src'
/bin/sh: -c: line 0: syntax error near unexpected token `('
/bin/sh: -c: line 0: `echo Modules will not be built. Python version 2 (2.7.5 or later) is required to build QtWebEngine.'
make[2]: *** [errorbuild] Error 1
```
 2021-04-12 11:00:32 +02:00
thelfer
9e702a3d44 tfel: add missing variant (#22558) 
The variant was used but not defined.
 2021-04-12 06:58:10 +00:00
Martin Pokorny
06f291a3cd libsakura: Change precision for fftw dependency depending on libsakura version (#22924) 
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
 2021-04-12 08:38:18 +02:00
Massimiliano Culpo
215d194482 ASP-based solver: assign OS correctly with inheritance from parent (#22896) 
fixes #22871

When in presence of multiple choices for the operating system
we were lacking a rule to derive the node OS if it was
inherited.
 2021-04-11 01:01:09 -06:00
Sreenivasa Murthy Kolam
291a2b541b fix 22802- fix incorrect arch list for rocblas (#22881) 2021-04-10 11:17:21 +02:00
Harmen Stoppels
391ab10337 Drop cxx berkeley-db (#22899) 2021-04-09 19:30:22 -07:00
Peter Scheibel
f624ce0834 Build process output: handle UTF-8 for python 3.x to 3.7 (#22888) 
We set LC_ALL=C to encourage a build process to generate ASCII
output (so our logger daemon can decode it). Most packages
respect this but it appears that intel-oneapi-compilers does
not in some cases (see #22813). This reads the output of the build
process as UTF-8, which still works if the build process respects
LC_ALL=C but also works if the process generates UTF-8 output.

For Python >= 3.7 all files are opened with UTF-8 encoding by
default. Python 2 does not support the encoding argument on
'open', so to support Python 2 the files would have to be
opened in byte mode and explicitly decoded (as a side note,
this would be the only way to handle other encodings without
being informed of them in advance).
 2021-04-09 18:10:01 -07:00
Jen Herting
8d52200cbc New package: r-ca (#22913) 
Co-authored-by: Alex C Leute <aclrc@rit.edu>
 2021-04-09 14:13:21 -06:00
Jen Herting
35ed2b26b5 New package: r-assertive-properties (#22914) 
Co-authored-by: Alex C Leute <aclrc@rit.edu>
Co-authored-by: Alex Leute <acl2809@rit.edu>
 2021-04-09 15:08:18 -05:00
Robert Mijakovic
9e6ef0e697 Flatbuffers: fixes for GCC 10+ (#22829) 2021-04-09 10:46:48 -07:00
Seth R. Johnson
ca5c2de517 swig: mark conflict and add maintainer (#22911) 
Closes #22407
 2021-04-09 17:38:49 +00:00
Olivier Cessenat
4d288a802e New Package: STRIPACK (#22544) 2021-04-09 09:26:58 -07:00
Danny Taller
e21e26094e CARE and dependencies fixed to work with +cuda (#22874) 2021-04-08 20:54:37 +00:00
Ryan Marcellino
1c5c53f505 new package: py-pytest-qt (#22878) 2021-04-08 15:07:28 -05:00
Maciej Wójcik
4adb76c4c5 Gromacs CUDA patch + some version constraints (#22851) 2021-04-08 09:52:41 -07:00
darmac
4807956977 py-mo-pack: add LDFLAGS to fix build error (#22747) 2021-04-08 11:06:57 -05:00
darmac
8a0aec4c4d py-pyfftw: add LDFLAGS to fix build error (#22745) 2021-04-08 11:06:23 -05:00
Jen Herting
44d2444854 openal-soft: new package (#22265) 2021-04-08 16:55:45 +02:00
lpoirel
0ecce5797e petsc: forward +metis to mumps (#21291) 
Co-authored-by: lpoirel <lpoirel@users.noreply.github.com>
 2021-04-08 16:50:58 +02:00
darmac
e0f810956c libmcrypt: new package (#22144) 2021-04-08 16:48:47 +02:00
Todd Gamblin
19b6d3589a bugfix: spack config blame should print all lines of config (#22598) 
* bugfix: fix representation of null in spack_yaml output

Nulls were previously printed differently by `spack config blame config`
and `spack config get config`.  Fix this in the `spack_yaml` dumpers.

* bugfix: `spack config blame` should print all lines of config

`spack config blame` was not printing all lines of configuration because
there were no annotations for empty lines in the YAML dump output. Fix
this by removing empty lines.
 2021-04-08 16:37:16 +02:00
Robert Pavel
f27fefc3c1 Exodusii: added versions up to v2021-04-05 (#22819) 
Fixed previously unspecified python dependency and ensured that spack's
python is what exodus@v2016 uses. Also, in the process, identified many
missing versions
 2021-04-08 16:36:41 +02:00
Robert Mijakovic
7170c666a0 hpctoolkit: fix for GCC 10 (#22864) 
Co-authored-by: Robert Mijakovic <robert.mijakovic@lxp.lu>
 2021-04-08 08:31:17 -06:00
Tomoyasu Nojiri
a0f9ffd80c manta: make it build on aarch64 (#22630) 2021-04-08 16:16:30 +02:00
Cyrus Harrison
68cec598dc glfw: make it build on MacOS (#22626) 2021-04-08 14:14:14 +02:00
Harmen Stoppels
65563946e3 squashfs: ensure we install with required options (#22863) 
Currently the make install step uses the default variables, which causes
things to rebuild with default options.
 2021-04-08 14:11:40 +02:00
lorddavidiii
5b77046e20 ncurses: add determine_variants for abi version (#22647) 2021-04-08 14:10:36 +02:00
Toyohisa Kameyama
d805be02ec autotools: ensure config.guess and config.sub are writeable before patching them (#19837) 2021-04-08 14:07:43 +02:00
iarspider
da88c0e6ff Add slightly older version of Oracle Instant Client (#22862) 2021-04-08 13:59:42 +02:00
darmac
70e132dd9a collectd: add v5.12.0 (#22746) 
Changed url to use release tarball instead of repo snapshot
as this permits to drop build deps
 2021-04-08 13:47:55 +02:00
Adam J. Stewart
cca5f260e5 py-python-certifi-win32: add new package (#22843) 2021-04-08 13:33:04 +02:00
Filippo Spiga
5500eed60c NVHPC: add v21.3 (#22860) 2021-04-08 09:06:53 +00:00
Scott McMillan
30153b1064 tar: make it build with nvhpc (#22853) 
Co-authored-by: Scott McMillan <smcmillan@nvidia.com>
 2021-04-08 10:57:05 +02:00
Scott McMillan
2a7f588612 kim-api: support the NVIDIA compiler (#22857) 
Co-authored-by: Scott McMillan <smcmillan@nvidia.com>
 2021-04-08 10:55:32 +02:00
Adam J. Stewart
e38aac8cb6 py-wincertstore: add new package (#22844) 2021-04-08 02:55:10 -06:00
Glenn Johnson
8246e4dde0 Patch to fix mariadb and mariadb-c-client packages for cmake-3.20 (#22854) 2021-04-08 10:50:17 +02:00
Vicente Bolea
f1f5f9bf5b vtkm: add v1.6.0-rc1, make v1.5.1 preferred (#22855) 
Signed-off-by: Vicente Adolfo Bolea Sanchez <vicente.bolea@kitware.com>
 2021-04-08 10:45:05 +02:00
Dr. Christian Tacke
7e17fb1ae1 root: add conflict with intel-oneapi-tbb (#22850) 
As originally noted, ROOT 6.22 does not work with intel's
TBB >= 2021.1. So we need to also conflict with the newer
package (intel-oneapi-tbb)
 2021-04-08 10:38:46 +02:00
Sreenivasa Murthy Kolam
43bdbc8234 bumpup version for rocm-debug-agent,rocprofiler,rocsolver for rocm-4.… (#22722) 2021-04-07 21:16:56 +00:00